bam_csi.nf.test.snap

{
    "Run with profile test | bam_csi_index": {
        "content": [
            39,
            null,
            [
                "pipeline_info",
                "pipeline_info/nf_core_pipeline_software_mqc_versions.yml",
                "preprocessing",
                "preprocessing/GM12878",
                "preprocessing/GM12878/GM12878.md.bam",
                "preprocessing/GM12878/GM12878.md.bam.csi",
                "preprocessing/GM12878/GM12878.recal.bam",
                "preprocessing/GM12878/GM12878.recal.bam.csi",
                "reports",
                "reports/multiqc_data",
                "reports/multiqc_data/multiqc.log",
                "reports/multiqc_data/multiqc_citations.txt",
                "reports/multiqc_data/multiqc_data.json",
                "reports/multiqc_data/multiqc_software_versions.txt",
                "reports/multiqc_data/multiqc_sources.txt",
                "reports/multiqc_report.html",
                "reports/stats",
                "reports/stats/GM12878",
                "reports/stats/GM12878/GM12878.flagstat",
                "reports/stats/GM12878/GM12878.stats",
                "reports/stats/GM12878/STAR_log",
                "reports/stats/GM12878/STAR_log/GM12878.Log.final.out",
                "reports/stats/GM12878/STAR_log/GM12878.Log.out",
                "reports/stats/GM12878/STAR_log/GM12878.Log.progress.out",
                "reports/stats/GM12878/STAR_log/GM12878.SJ.out.tab",
                "samtools",
                "samtools/GM12878.bam",
                "samtools/GM12878.bam.bai",
                "variant_calling",
                "variant_calling/GM12878",
                "variant_calling/GM12878/GM12878.haplotypecaller.vcf.gz",
                "variant_calling/GM12878/GM12878.haplotypecaller.vcf.gz.csi",
                "variant_calling/dbsnp_146.hg38.vcf",
                "variant_calling/dbsnp_146.hg38.vcf/dbsnp_146.hg38.vcf.gz.csi",
                "variant_calling/mills_and_1000G.indels.vcf",
                "variant_calling/mills_and_1000G.indels.vcf/mills_and_1000G.indels.vcf.gz.csi"
            ]
        ],
        "meta": {
            "nf-test": "0.9.0",
            "nextflow": "24.09.0"
        },
        "timestamp": "2024-10-11T14:57:45.737274"
    }
}