Markov model lectures

[maxentile]

By Frank Noe... nice! http://docs.markovmodel.org/

Coordinate transforms
1 Time-lagged independent component analysis (TICA)
Coordinate clustering
2 Regular space clustering
Markov model estimation
3 Implied timescales
4 Nonreversible Markov model estimation
5 Reversible Markov model estimation
Markov model analysis
6 Perron-cluster cluster analysis (PCCA)
7 Computational spectroscopy / dynamical fingerprints
8 Transition path theory (TPT)
Multiple thermodynamic states
9 Thermodynamic reweighting principle
10 Discrete transition-based reweighting analysis method (dTRAM)