Makefile

# Makefile for Sphinx documentation
#

# You can set these variables from the command line.
SPHINXOPTS    =
SPHINXBUILD   = sphinx-build
PAPER         =
BUILDDIR      = _build

# Specific stuff for website upload
WWW = dynevoro@dynevor.org:public_html/perrin
WWWDIR       = $(BUILDDIR)/html

# Internal variables.
PAPEROPT_a4     = -D latex_paper_size=a4
PAPEROPT_letter = -D latex_paper_size=letter
ALLSPHINXOPTS   = -d _build/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

.PHONY: help clean html dirhtml pickle json htmlhelp qthelp latex changes linkcheck doctest

help:
	@echo "Please use \`make <target>' where <target> is one of"
	@echo "  html      to make standalone HTML files"
	@echo "  dirhtml   to make HTML files named index.html in directories"
	@echo "  pickle    to make pickle files"
	@echo "  json      to make JSON files"
	@echo "  htmlhelp  to make HTML files and a HTML help project"
	@echo "  qthelp    to make HTML files and a qthelp project"
	@echo "  latex     to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
	@echo "  changes   to make an overview of all changed/added/deprecated items"
	@echo "  linkcheck to check all external links for integrity"
	@echo "  doctest   to run all doctests embedded in the documentation (if enabled)"
	@echo "  gh-pages  to make html pages and push up to github pages"

clean:
	-rm -rf _build/*
	python ./tools/clear_all_ipynb.py .
	rm -rf *-stamp

notebook_names = exploring_r_formula ioannidis_2005
notebook_pages := $(patsubst %,$(WWWDIR)/%.html, $(notebook_names))

wwwdir: wwwdir-stamp
wwwdir-stamp:
	if [ ! -d $(WWWDIR) ]; then mkdir -p $(WWWDIR); fi
	touch $@

$(WWWDIR)/%.html : %.ipynb
	./tools/write_ipynb.py $< $(WWWDIR)

html-only:
	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(WWWDIR)
	@echo
	@echo "HTML build finished. The HTML pages are in $(WWWDIR)."

html: wwwdir $(notebook_pages) html-only
	# To keep an old link from failing
	cp $(WWWDIR)/exploring_r_formula.ipynb $(WWWDIR)/exploring_r_formula_evaluated.ipynb

dirhtml:
	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) _build/dirhtml
	@echo
	@echo "Build finished. The HTML pages are in _build/dirhtml."

pickle:
	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) _build/pickle
	@echo
	@echo "Build finished; now you can process the pickle files."

json:
	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) _build/json
	@echo
	@echo "Build finished; now you can process the JSON files."

htmlhelp:
	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(WWWDIR)help
	@echo
	@echo "Build finished; now you can run HTML Help Workshop with the" \
	      ".hhp project file in $(WWWDIR)help."

qthelp:
	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) _build/qthelp
	@echo
	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
	      ".qhcp project file in _build/qthelp, like this:"
	@echo "# qcollectiongenerator _build/qthelp/pydagogue.qhcp"
	@echo "To view the help file:"
	@echo "# assistant -collectionFile _build/qthelp/pydagogue.qhc"

latex:
	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) _build/latex
	@echo
	@echo "Build finished; the LaTeX files are in _build/latex."
	@echo "Run \`make all-pdf' or \`make all-ps' in that directory to" \
	      "run these through (pdf)latex."

changes:
	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) _build/changes
	@echo
	@echo "The overview file is in _build/changes."

linkcheck:
	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) _build/linkcheck
	@echo
	@echo "Link check complete; look for any errors in the above output " \
	      "or in _build/linkcheck/output.txt."

doctest:
	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) _build/doctest
	@echo "Testing of doctests in the sources finished, look at the " \
	      "results in _build/doctest/output.txt."

upload: html
	chmod -R uog+r $(WWWDIR)
	rsync -avrzH --copy-links --delete -e ssh  $(WWWDIR)/ $(WWW)