forked from bridgedb/docker
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathgdb.config
41 lines (34 loc) · 2.64 KB
/
gdb.config
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
# Configure backends on the lines below.
# Each line should take the format
# Species <tab> Configuration string
# Multiple configuration strings per species are allowed.
#Homo sapiens idmapper-pgdb:/home/martijn/PathVisio-Data/gene databases/Hs_Derby_20090509.pgdb
#Mus musculus idmapper-pgdb:/home/martijn/PathVisio-Data/gene databases/Mm_Derby_20081119.pgdb
Homo sapiens /opt/bridgedb-databases/bridgedb.org/data/gene_database/Hs_Derby_85.bridge
Mus musculus /opt/bridgedb-databases/bridgedb.org/data/gene_database/Mm_Derby_85.bridge
Rattus norvegicus /opt/bridgedb-databases/bridgedb.org/data/gene_database/Rn_Derby_85.bridge
Danio rerio /opt/bridgedb-databases/bridgedb.org/data/gene_database/Dr_Derby_85.bridge
Caenorhabditis elegans /opt/bridgedb-databases/bridgedb.org/data/gene_database/Ce_Derby_85.bridge
Saccharomyces cerevisiae /opt/bridgedb-databases/bridgedb.org/data/gene_database/Sc_Derby_85.bridge
Drosophila melanogaster /opt/bridgedb-databases/bridgedb.org/data/gene_database/Dm_Derby_85.bridge
Anopheles gambiae /opt/bridgedb-databases/bridgedb.org/data/gene_database/Ag_Derby_85.bridge
Arabidopsis thaliana /opt/bridgedb-databases/bridgedb.org/data/gene_database/At_Derby_85.bridge
Bos taurus /opt/bridgedb-databases/bridgedb.org/data/gene_database/Bt_Derby_85.bridge
Bacillus subtilis /opt/bridgedb-databases/bridgedb.org/data/gene_database/Bs_Derby_85.bridge
Canis familiaris /opt/bridgedb-databases/bridgedb.org/data/gene_database/Cf_Derby_85.bridge
Equus caballus /opt/bridgedb-databases/bridgedb.org/data/gene_database/Qc_Derby_85.bridge
Gallus gallus /opt/bridgedb-databases/bridgedb.org/data/gene_database/Gg_Derby_85.bridge
Mycobacterium tuberculosis /opt/bridgedb-databases/bridgedb.org/data/gene_database/Mx_Derby_85.bridge
Oryza sativa /opt/bridgedb-databases/bridgedb.org/data/gene_database/Oj_Derby_85.bridge
Pan troglodytes /opt/bridgedb-databases/bridgedb.org/data/gene_database/Pt_Derby_85.bridge
Sus scrofa /opt/bridgedb-databases/bridgedb.org/data/gene_database/Ss_Derby_85.bridge
Zea mays /opt/bridgedb-databases/bridgedb.org/data/gene_database/Zm_Derby_85.bridge
* /opt/bridgedb-databases/bridgedb.org/data/gene_database/metabolites_100227.bridge
# Databases configured with an asterisk instead of the species name
# Will be mixed in for each species
#* idmapper-pgdb:/home/martijn/PathVisio-Data/gene databases/metabolites_081205.pgdb
[Drivers]
# Optional BridgeDb and JDBC drivers can be listed here
# Make sure these drivers are in the server class-path.
# org.bridgedb.webservice.biomart.IDMapperBiomart
# org.bridgedb.webservice.synergizer.IDMapperSynergizer