This is a small book to give you an overview of my favourite sources and tested tools for BioImage Analysis.
- Added and checked off YOLOv5 - SciCount and pyimg - Image quality assesment 03_tested_tools.md
- Checked off StarDist and Noise2Void 03_tested_tools.md
- Added a Noise2Void description 03_tested_tools.md
- Added a StarDist description 03_tested_tools.md
- Added a FIJI tutorial link 03_tested_tools.md
- Added a QuPath tutorial link 03_tested_tools.md
- Added section for BioImage Analysis lectures
- Included links to Bio-image Analysis resources and YouTube channel
- Added information about NEUBIAS Academy and F1000Research Gateway
- Included information about open access books and papers related to BioImage Analysis
- Included Image.sc Forum for scientific imaging questions
- Checked off tested tools such as YOLOv5 - SciCount, ImageJ in Python, StarDist, Noise2Void, CellPose, PhyCV, and VEViD
- Added example notebooks for LTEE, Wildlife detection and Smear counting
- Added two new lecture series and two new Python lecture series
- Included lecture series, Python lecture series, and tested tools to comprehensive class
- Added a section about communities with links to four forums
- Updated links for papers on image analysis accuracy and precision
- Added information about communities, papers, and lecture series related to BioImage Analysis
- Added and updated links to various resources
- Added and updated information about tested tools including YOLOv5, ImageJ in Python, PhyCV, and pyimq.
- Updated the README.md with new sections for BioImage Analysis lectures, resources, and tested tools
- Added information about open access books and papers related to BioImage Analysis, and Image.sc Forum
- Added example notebooks for LTEE, Wildlife detection, and Smear counting
- Added a section about communities with links to four forums
- Updated links for papers on image analysis accuracy and precision
- Added a section about tools for reproducibility and updated the link to the paper "Avoiding Twisted Pixels"
- Added information about The Turing Way and Zero-to-Binder, and link to ChatGPT
- Added two references to relevant papers and a reference to the Metrics Reloaded framework
- Tested pyTFM and Cell ACDC, and added descriptions of them to the README.md
- Updated Introduction
- Added information about NEUBIAS Academy and F1000Research Gateway
- Added information about open access books and papers related to BioImage Analysis
- Added information about Image.sc Forum as a place to ask questions about scientific imaging
- Checked off YOLOv5 - SciCount, ImageJ in Python, StarDist, Noise2Void, and CellPose 03_tested_tools.md
- Added PhyCV - physics-inspired Computer Vision Library 03_tested_tools.md
- Added example notebooks for LTEE, Wildlife detection and Smear counting [SciAugment]
- Added Vision Enhancement via Virtual diffraction and coherent Detection (VEViD) 03_tested_tools.md
- Added two new lecture series to the comprehensive class 02_lectures.md
- Added two new Python lecture series 02_lectures.md
- Added lecture series, Python lecture series, and tested tools to the comprehensive class
- Added information about NEUBIAS Academy, F1000Research Gateway, open access books and papers, and Image.sc Forum