| Network | Paper(s) | Tasks | Status | Last test | Link to example training and test dataset |
|---|---|---|---|---|---|
| U-Net (2D) | here and here | Binary segmentation | Fully supported | 27/07/23 ✅ working (IH) | here |
| U-Net (3D) | here | Binary segmentation | Fully supported | 27/07/23 ✅ working (IH) | EPFL dataset |
| U-Net (2D) multilabel | here and here | Semantic segmentation | Under beta-testing | 16/07/23 ✅ working (IH) | here |
| DenoiSeg | here | Joint denoising and binary segmentation | Fully supported | Available soon | |
| StarDist (2D) | here and here | Instance segmentation | Fully supported | 10/09/24 ✅ working (GJ) | here |
| StarDist (3D) | here and here | Instance segmentation | Fully supported | 07/10/22 ✅ working (GJ) | from Stardist github |
| Cellpose (2D and 3D) | here | Instance segmentation (Cells or Nuclei) | Fully supported | 05/09/23 ✅ working (IH) | here |
| SplineDist (2D) | here | Instance segmentation | Fully supported | 07/10/22 ✅ working (GJ) | here |
| EmbedSeg (2D) | here | Instance segmentation | Under beta-testing | 01/01/23 ✅ working (AR) | here and here |
| MaskRCNN (2D) | here | Panoptic segmentation | Under beta-testing | nan | Coming soon! |
| Interactive Segmentation - Kaibu (2D) | here | Interactive instance segmentation | Under beta-testing | nan | Coming soon! |
| Noise2Void (2D) | here | Self-supervised denoising | Fully supported | 14/07/23 ✅ working (IH) | here or here |
| Noise2Void (3D) | here | Self-supervised denoising | Fully supported | 14/07/23 ✅ working (IH) | here |
| CARE (2D) | here | Supervised denoising | Fully supported | 31/07/23 ✅ working (IH) | here or here |
| CARE (3D) | here | Supervised denoising | Fully supported | 31/07/23 ✅ working (IH) | here |
| 3D-RCAN | here | Supervised denoising | Under beta-testing | here | |
| DecoNoising (2D) | here | Self-supervised denoising | Under beta-testing | 07/10/22 ✅ working (GJ) | here or here |
| Deep-STORM | here | Single Molecule Localization Microscopy (SMLM) image reconstruction from high-density emitter data | Fully supported | 27/07/23 ✅ working (IH) | Training data simulated in the notebook or available from here |
| DFCAN | here | image upsampling | Under beta-testing | 08/10/22 ✅ working (GJ) | here |
| WGAN | here | image upsampling | Under beta-testing | 22/09/22 ✅ working (IvanHidalgo & EGM) | here |
| YOLOv2 | here | Object detection (bounding boxes) | Fully supported | 🔴 Broken, not compatible with TF 2 | here |
| Detectron2 | here | Object detection (bounding boxes) | Under beta-testing | nan | here |
| RetinaNet | here | Object detection (bounding boxes) | Under beta-testing | nan | here |
| Label-free prediction (fnet) 2D | here | Artificial labelling | Under beta-testing | 🔴 Broken, not compatible with TF 2 | Coming soon |
| Label-free prediction (fnet) 3D | here | Artificial labelling | Fully supported | nan | here |
| CycleGAN | here | Unpaired Image-to-Image Translation | Fully supported | 14/07/23 ✅ working (IH) | here |
| pix2pix | here | Paired Image-to-Image Translation | Fully supported | 12/12/23 ✅ working (EGM) | here |
| DRMIME | here | Affine or perspective image registration | Under beta-testing | 12/08/22 ✅ working (GJ) | Coming soon! |
| Diffusion Model for SMLM | here | SMLM image generation | Fully supported | 12/02/24 ✅ working (EGM) | here and here |