diff --git a/README.md b/README.md index f825544..7aef9fa 100644 --- a/README.md +++ b/README.md @@ -5,11 +5,16 @@ This package provides tools for the analysis of raw nanopore sequencing data, in Full documentation available at [Read the Docs](https://nanoraw.readthedocs.io) ## Installation -Install nanoraw via pip +Install nanoraw without plotting dependencies (base genome_resquiggle algorithm and text outputs: wig and fasta) ``` pip install nanoraw ``` +Install nanoraw with plotting dependecies (requires separate installation of R packages ggplot2 and cowplot) +``` +pip install nanoraw[plot] +``` + Install bleeding edge via github ``` pip install git+https://github.com/marcus1487/nanoraw.git diff --git a/docs/conf.py b/docs/conf.py index ad92a7e..eeaa670 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -55,9 +55,9 @@ # built documents. # # The short X.Y version. -version = u'0.4.1' +version = u'0.4.2' # The full version, including alpha/beta/rc tags. -release = u'0.4.1' +release = u'0.4.2' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/nanoraw/nanoraw_helper.py b/nanoraw/nanoraw_helper.py index 1b35673..17ddb05 100644 --- a/nanoraw/nanoraw_helper.py +++ b/nanoraw/nanoraw_helper.py @@ -8,7 +8,7 @@ from itertools import izip from collections import defaultdict, namedtuple -NANORAW_VERSION = '0.4.1' +NANORAW_VERSION = '0.4.2' readData = namedtuple('readData', ( 'start', 'end', 'segs', 'read_start_rel_to_raw', diff --git a/setup.py b/setup.py index 5914999..8241936 100644 --- a/setup.py +++ b/setup.py @@ -6,9 +6,10 @@ def readme(): setup( name = "nanoraw", - version = "0.4.1", + version = "0.4.2", packages = ["nanoraw"], install_requires = ['h5py', 'numpy', 'scipy'], + extras_require={'plot':['rpy2']}, author = "Marcus Stoiber", author_email = "mhstoiber@lbl.gov",