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ktUpdateTaxonomy.sh stopped working. #191

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MuriloACassiano opened this issue Mar 12, 2024 · 1 comment
Open

ktUpdateTaxonomy.sh stopped working. #191

MuriloACassiano opened this issue Mar 12, 2024 · 1 comment

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@MuriloACassiano
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I use ktUpdateTaxonomy.sh inside my pipelines, in conda environments created by snakemake.
Recently, the last couple of days it stopped working. The only message available is "is your internet connection ok?", and it is.

Any light on that?

Thanks a lot!

@MuriloACassiano
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It worked for me when I changed the url in two lines in the code.

curl$timestring -s -R --retry 1 -o $name ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/$prefix/$name
...
curl -s -R --retry 1 -o $name.md5 ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/$prefix/$name.md5

I bag your pardon if it is a known issue I could not find.

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