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CADD scores for T2T-CHM13 #60

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xosxos opened this issue May 13, 2022 · 2 comments
Open

CADD scores for T2T-CHM13 #60

xosxos opened this issue May 13, 2022 · 2 comments
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help wanted Extra attention is needed

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@xosxos
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xosxos commented May 13, 2022

Thank you for the great effort in genomics! I was wondering if there is already a straight forward way to annotate CADD scores for T2T-CHM13 calls?
@arangrhie
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Hello, no, we have no CADD scores available at the moment. Would be great if someone could contribute and generate this data.

@arangrhie arangrhie added the help wanted Extra attention is needed label May 13, 2022
@apraga
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apraga commented Jun 13, 2023

Hi, would it make sense to liftover CADD directly from the GRCh38 version, like you did for dbSNP and Clinvar ?
If so, do you have the workflow stored somewhere as a script ?

Thanks,

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@apraga @arangrhie @xosxos