sorted-r-blacklist

#recipes/r-giant
#recipes/r-compquadform
#recipes/r-leaps
#recipes/r-qqman
#recipes/r-deldir
#recipes/r-scrm
#recipes/r-gsubfn
#recipes/r-digest
#recipes/bioconductor-impute
#recipes/r-pracma
#recipes/r-catools
#recipes/r-robustrankaggreg
#recipes/r-fitdistrplus
#recipes/r-corrplot
#recipes/r-scatterplot3d
#recipes/r-corpcor
#recipes/r-sparql
#recipes/r-snow
#recipes/r-bit
#recipes/r-fastcluster
#recipes/r-sendmailr
#recipes/bioconductor-biocgenerics
#recipes/r-maldiquant
#recipes/r-fda
#recipes/r-compute.es
#recipes/r-snowfall
#recipes/r-permute
#recipes/r-funr
#recipes/r-calibrate

# r-ash needs gfortran; even after adding gcc it complains about needing
# lsb_release
recipes/r-ash

#recipes/r-deoptimr
#recipes/bioconductor-biocinstaller
#recipes/r-lsd
#recipes/r-r.methodss3
#recipes/r-readmzxmldata
#recipes/r-base64
#recipes/r-idr
#recipes/r-globals
#recipes/r-shape
#recipes/r-signal
#recipes/r-runit
#recipes/r-changepoint
#recipes/r-bio3d
#recipes/r-jsonlite
#recipes/r-rappdirs
#recipes/bioconductor-seqlogo
#recipes/r-findpython
#recipes/r-params
#recipes/r-bh
#recipes/r-mba
#recipes/bioconductor-illuminaio
#recipes/r-locfit
#recipes/r-pcapp
#recipes/r-rpmg
#recipes/r-ellipse
#recipes/macs2
#recipes/r-rcircos
##recipes/r-biasedurn/1.07
#recipes/r-batch
#recipes/r-xmlrpc
#recipes/peakranger
#recipes/r-longitudinal
#recipes/bioconductor-protgenerics
#recipes/r-splancs
#recipes/r-png
#recipes/r-writexls
#recipes/r-magrittr
#recipes/r-tiff


# rsem is giving zlib errors. probably needs patching
recipes/rsem


#recipes/r-polynom
#recipes/r-preseqr
#recipes/r-rwave
#recipes/r-r.oo
#recipes/bioconductor-zlibbioc
#recipes/bioconductor-affyio
#recipes/r-xnomial
#recipes/r-abind
#recipes/r-svgui
#recipes/bioconductor-ropls
#recipes/bioconductor-ropls/1.2.14
#recipes/bioconductor-rhdf5
#recipes/r-ore
#recipes/bioconductor-graph
#recipes/bioconductor-kegggraph
#recipes/bioconductor-rcytoscape
#recipes/r-fdrtool
#recipes/bioconductor-hpar
#recipes/bioconductor-biobase
#recipes/bioconductor-geoquery
#recipes/bioconductor-rsubread
#recipes/bioconductor-dupradar
#recipes/r-nozzle.r1
#recipes/r-plotrix

# r-phonr seems to loop indefinitely when trying to build.
recipes/r-phonr

#recipes/r-gsalib
#recipes/bioconductor-multtest
#recipes/bioconductor-siggenes

# r-blockmodeling is returning error:
# gfortran  -fpic  -I/opt/conda/conda-bld/r-blockmodeling_1475175358899/_b_env_placehold_placehold_pl/include -L/opt/conda/conda-bld/r-blockmodeling_1475175358899/_b_env_placehold_placehold_pl/lib -c  REGD_NE_R.f90 -o REGD_NE_R.o
# f951: internal compiler error: Illegal instruction
# Please submit a full bug report,
# with preprocessed source if appropriate.
# See <http://gcc.gnu.org/bugs.html> for instructions.
# make: *** [REGD_NE_R.o] Error 1
recipes/r-blockmodeling
#

# bioconductor-dnacopy has the same gfortran error as above for r-blockmodeling
recipes/bioconductor-dnacopy


#recipes/r-amap
#recipes/r-ade4
#recipes/r-seqinr
#recipes/bioconductor-limma

# older limma packages should stay blacklisted until we can track down stable
# URLs for these versions.
recipes/bioconductor-limma/3.26.7
recipes/bioconductor-limma/3.28.6
recipes/bioconductor-limma/3.28.2

#recipes/bioconductor-marray
#recipes/bioconductor-s4vectors

# older s4vectors should stay blacklisted until we can track down stable
# version for 0.8.7
recipes/bioconductor-s4vectors/0.8.7

#recipes/r-listenv
#recipes/r-lambda.r
#recipes/r-readbrukerflexdata
#recipes/r-maldiquantforeign
#recipes/bioconductor-preprocesscore
#recipes/bioconductor-affy
#recipes/bioconductor-rbgl
recipes/r-hwriter
recipes/r-mutoss
recipes/r-misc3d
recipes/r-rcppparallel
recipes/r-svdialogs
recipes/r-robustbase
recipes/r-genenet
recipes/bioconductor-pcamethods
recipes/r-htmltools
recipes/r-proj4
recipes/r-multitaper
recipes/r-readr
recipes/r-spam
recipes/r-fields
recipes/r-matrixstats
recipes/bioconductor-cghbase

# depends on bioconductor-dnacopy, which has some gfortran issues
recipes/bioconductor-cghcall


recipes/r-multicool
recipes/bioconductor-sradb
#recipes/r-statmod
recipes/r-futile.options
recipes/r-futile.logger
recipes/r-venndiagram
recipes/bioconductor-biocparallel
recipes/r-googlevis
recipes/r-bit64
recipes/r-dunn.test
recipes/r-bigmemory.sri
recipes/r-bigmemory
recipes/bioconductor-edger
recipes/bioconductor-edger/3.12.1
recipes/r-ks
#recipes/rpy2
recipes/lefse
recipes/r-future
recipes/r-pmcmr
recipes/r-rsm
#recipes/r-yaml
recipes/r-htmlwidgets
recipes/r-dt
recipes/r-docopt
recipes/kmergenie
recipes/r-knitr
recipes/r-fftwtools
recipes/bioconductor-ebimage
recipes/r-gplots
recipes/r-gmd
recipes/bioconductor-made4
recipes/r-globaloptions
recipes/r-circlize
recipes/r-cghflasso
recipes/r-testthat

# depends on r-blockmodeling which has some gfortran issues
recipes/bioconductor-ebseq

recipes/r-dendextend
recipes/bioconductor-tximport
recipes/r-rmarkdown
recipes/r-knitrbootstrap
recipes/r-diagram
recipes/r-flowr
recipes/r-geomap
#recipes/r-inline
recipes/r-pheatmap
recipes/bioconductor-biosigner
recipes/r-dorng
recipes/r-rlist
recipes/r-pore
recipes/r-checkmate
recipes/r-bbmisc
recipes/r-fail
recipes/r-batchjobs
recipes/bioconductor-iranges
recipes/bioconductor-iranges/2.4.7
recipes/bioconductor-iranges/2.4.6
recipes/bioconductor-mosaics
recipes/bioconductor-jmosaics
recipes/bioconductor-xvector
recipes/bioconductor-annotationdbi
recipes/bioconductor-kegg.db
recipes/bioconductor-org.hs.eg.db
recipes/bioconductor-annotationforge
recipes/bioconductor-org.mm.eg.db
recipes/bioconductor-graphite
recipes/bioconductor-org.ce.eg.db
recipes/bioconductor-biomart
recipes/bioconductor-go.db
recipes/bioconductor-gosemsim
recipes/bioconductor-illuminamousev2.db
recipes/bioconductor-org.dm.eg.db
recipes/bioconductor-topgo
recipes/bioconductor-do.db
recipes/bioconductor-biostrings
recipes/r-rBLAST
recipes/bioconductor-keggrest
recipes/bioconductor-gage
recipes/bioconductor-genomeinfodb
recipes/bioconductor-genomicranges
recipes/triform2
recipes/bioconductor-summarizedexperiment/1.0.2
recipes/bioconductor-rsamtools
recipes/r-spp
recipes/bioconductor-genomicalignments
recipes/bioconductor-rtracklayer
recipes/bioconductor-genomicfeatures
recipes/bioconductor-bumphunter
recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene
recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
recipes/bioconductor-organismdbi
recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
recipes/bioconductor-genelendatabase/1.6.0
recipes/bioconductor-goseq/1.22.0
recipes/bioconductor-bsgenome
recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3
recipes/bioconductor-regioner
recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19
recipes/bioconductor-variantannotation
recipes/bioconductor-bsgenome.ecoli.ncbi.20080805
recipes/bioconductor-basic4cseq
recipes/r-dpeak
recipes/bioconductor-motifrg
recipes/bioconductor-bsgenome.celegans.ucsc.ce6
recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9
recipes/bioconductor-chipcomp
recipes/bioconductor-csaw
recipes/bioconductor-biovizbase
recipes/bioconductor-bayespeak
recipes/bioconductor-cn.mops
recipes/bioconductor-seqpattern
recipes/r-mclust
recipes/jamm
recipes/jamm/1.0.7.2
recipes/r-rjson
recipes/r-wasabi
recipes/r-getoptlong
recipes/bioconductor-complexheatmap
recipes/r-rniftyreg
recipes/r-ggplot2
recipes/r-mutationalpatterns

# r-ggalt depends on r-ash which has unresolved issues
recipes/r-ggalt

recipes/r-ggdendro
recipes/bioconductor-ggtree
recipes/r-ggally
recipes/bioconductor-ggbio
recipes/r-viridis
recipes/bioconductor-genomation
recipes/bioconductor-cexor
recipes/r-solarius
recipes/r-upsetr
recipes/bioconductor-chipseeker
recipes/r-ggrepel
recipes/r-mixomics
recipes/bioconductor-vsn
recipes/r-nanostringnorm
recipes/metilene
recipes/bioconductor-biomformat
recipes/bioconductor-degreport

# r-hrdcde depends on r-ash which has unresolved issues
recipes/r-hdrcde
recipes/r-r.utils
recipes/r-r.cache

# depends on bioconductor-dnacopy which has some gfortran issues
recipes/r-pscbs

# depends on bioconductor-dnacopy which has some gfortran issues
recipes/bioconductor-qdnaseq

recipes/bioconductor-gviz
recipes/bioconductor-cummerbund
recipes/bioconductor-biocstyle
recipes/poretools
recipes/bioconductor-mgug4122a.db
recipes/r-sleuth
recipes/r-rseis
recipes/r-rfoc
recipes/r-nor1mix
recipes/r-psych
recipes/bioconductor-annotate
recipes/bioconductor-gseabase
recipes/bioconductor-genefilter
recipes/bioconductor-sva
recipes/bioconductor-ballgown
recipes/bioconductor-category
recipes/bioconductor-gostats
recipes/bioconductor-geneplotter
recipes/bioconductor-deseq2/1.10.1
recipes/r-sartools/1.2.0
recipes/bioconductor-fourcseq
recipes/r-empiricalfdr.deseq2
recipes/bioconductor-deseq
recipes/r-dbchip
recipes/r-chbutils
recipes/mgkit
recipes/cap-mirseq
recipes/r-plotly
recipes/bioconductor-mzr
recipes/bioconductor-xcms/1.44.0
recipes/bioconductor-xcms/1.46.0
recipes/bioconductor-camera/1.22.0
recipes/bioconductor-camera/1.26.0
recipes/bioconductor-metams
recipes/r-probmetab/1.1
recipes/r-probmetab/1.0
recipes/r-ipo
recipes/r-beanplot
recipes/bioconductor-minfi
recipes/bioconductor-shortread
recipes/bioconductor-dada2
recipes/bioconductor-systempiper
recipes/bioconductor-diffbind
recipes/bioconductor-mmdiff
recipes/bioconductor-rgraphviz
recipes/bioconductor-rgraphviz/2.13.0
recipes/bioconductor-pathview
recipes/bioconductor-flowcl
#recipes/r-discriminer
recipes/bioconductor-isomirs

# depends on r-ash which has unresolved issues
recipes/r-rainbow

# depends on r-ash which has unresolved issues
recipes/bioconductor-bubbletree
recipes/r-rrcov
recipes/r-bma
recipes/r-coloc
recipes/bioconductor-flowcore
recipes/bioconductor-flowai
recipes/bioconductor-flowdensity
recipes/r-vegan/2.3_4
recipes/r-vegan/2.3_0
recipes/r-vegan/2.3_3
recipes/bioconductor-phyloseq
recipes/bioconductor-gagedata
recipes/mageck-vispr
recipes/bioconductor-qvalue
recipes/bioconductor-dose
recipes/bioconductor-clusterprofiler
recipes/bcbio-rnaseq
recipes/r-getopt
recipes/r-argparse
recipes/r-optparse
recipes/r-biom
recipes/bioconductor-dexseq