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DESCRIPTION
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DESCRIPTION
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Package: MutationalPatterns
Type: Package
Title: Studying patterns in base substitution catalogues
Description: An extensive toolset for the characterization and visualization
of a wide range of mutational patterns in base substitution data.
Version: 1.1.0
Date: 2016-08-24
Author: Francis Blokzijl, Roel Janssen, Ruben van Boxtel, Edwin Cuppen
Maintainer: Francis Blokzijl <[email protected]>,
Roel Janssen <[email protected]>
License: MIT + file LICENSE
URL: https://github.com/CuppenResearch/MutationalPatterns
Imports:
stats,
BiocGenerics (>= 0.18.0),
VariantAnnotation (>= 1.18.1),
reshape2 (>= 1.4.1),
plyr (>= 1.8.3),
ggplot2 (>= 2.1.0),
pracma (>= 1.8.8),
SummarizedExperiment (>= 1.2.2),
IRanges (>= 2.6.0),
GenomeInfoDb (>= 1.8.1),
Biostrings (>= 2.40.0),
gridExtra (>= 2.2.1)
Depends:
R (>= 3.3.0),
NMF (>= 0.20.6),
GenomicRanges (>= 1.24.0)
Suggests:
BSgenome (>= 1.40.0),
BiocStyle (>= 2.0.3),
biomaRt (>= 2.28.0),
BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2),
rtracklayer (>= 1.32.2)
biocViews: Genetics, SomaticMutation
ZipData: NA
LazyData: false
RoxygenNote: 5.0.1
Encoding: UTF-8