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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ATACAnnotateCelltype)
export(ATACAnnotateChromatinAccessibility)
export(ATACAnnotateTranscriptionFactor)
export(ATACAttachGenescore)
export(ATACCalculateGenescore)
export(ATACFilteringPlot)
export(ATACFragmentSizePlot)
export(ATACMapPlot)
export(ATACReadDistrPlot)
export(ATACRunSeurat)
export(ATACRunchromVAR)
export(ATACRuncicero)
export(ATACRuncisTopic)
export(ATACRunscABC)
export(ATACViewTracks)
export(FindAllMarkersMAESTRO)
export(FindMarkersMAESTRO)
export(Incorporate)
export(RNAAnnotateCelltype)
export(RNAAnnotateCelltypeCluster)
export(RNAAnnotateTranscriptionFactor)
export(RNAAssemblyConvert)
export(RNABatchCorrect)
export(RNACountToFPKM)
export(RNACountToTPM)
export(RNADiffusionMap)
export(RNAEnsemblToEntrez)
export(RNAEnsemblToSymbol)
export(RNAFilteringPlot)
export(RNAGCcontentPlot)
export(RNAGenebodyCoveragePlot)
export(RNANucleotidePlot)
export(RNAReadDistrPlot)
export(RNAReadQualityPlot)
export(RNARunPagoda)
export(RNARunSeurat)
export(VisualizeTFenrichment)
export(VisualizeUmap)
export(VisualizeVlnplot)
export(knn_smoothing)
import(EnsDb.Hsapiens.v86)
import(EnsDb.Mmusculus.v79)
import(GenomeInfoDb)
import(Signac)
import(biomaRt)
import(ggplot2)
import(gplots)
importClassesFrom(Matrix,dgCMatrix)
importFrom(GenomicRanges,GRanges)
importFrom(Gmisc,fastDoCall)
importFrom(MASS,glm.nb)
importFrom(ROCR,performance)
importFrom(ROCR,prediction)
importFrom(Seurat,CombinePlots)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,DimPlot)
importFrom(Seurat,ElbowPlot)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindIntegrationAnchors)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindTransferAnchors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,IntegrateData)
importFrom(Seurat,MinMax)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,ScaleData)
importFrom(Seurat,SplitObject)
importFrom(Seurat,TransferData)
importFrom(Seurat,VariableFeatures)
importFrom(Seurat,VlnPlot)
importFrom(Seurat,WhichCells)
importFrom(Signac,FindTopFeatures)
importFrom(Signac,RunSVD)
importFrom(Signac,RunTFIDF)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(devtools,source_url)
importFrom(dplyr,"%>%")
importFrom(future,nbrOfWorkers)
importFrom(future.apply,future_sapply)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_colour_gradient2)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_set)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(lmtest,lrtest)
importFrom(pbapply,pbsapply)
importFrom(presto,sumGroups)
importFrom(presto,wilcoxauc)
importFrom(reticulate,source_python)
importFrom(scales,hue_pal)
importFrom(tibble,as_tibble)
importFrom(uwot,umap)