auto_fast_dp

#!/bin/bash
#$1 = wedge size
#$2 = directory, should be absolute path
trap handler SIGINT
handler() { echo "interrupted"; exit 1; }
work_dir=$PWD
lib=$(which dectris-neggia.so)
if [ "$lib" = "" ]; then echo "error: no dectris-neggia.so found!"; exit 1; fi
if [ ! -d "$2" ]; then echo "error: invalid directory"; exit 1; fi
if [ $(which eiger2cbf) = "" ]; then echo "error: no eiger2cbf found"; exit 1; fi
if [ $(which fast_dp) = "" ]; then echo "error: no fast_dp found"; exit 1; fi;
touch tmpautofdp.dat
find $2 -name "*master.h5" > tmpautofdp.dat
while IFS='' read -r line || [ -n "$line" ]; do
    a=1
    b=$1
    nimages=$(eiger2cbf "$line" 2>/dev/null | tail -n 1)
#    echo "nimages=$nimages"
    dir=$2
    dirlen=`expr ${#dir} + 1`
    if [ "${dir: -1}" != "/" ]; then dirlen=`expr $dirlen + 1`; fi
#    echo "$dirlen"
    substr=$(echo "$line" | cut -c $dirlen-)
    substr="${substr%/*}"
    mkdir -p $substr
    cd $substr
    touch auto_fast_dp.log
    while [ "$b" -le "$nimages" ]; do
        echo "{ time fast_dp --lib=$lib -1 $a -N $b $line 2> fast_dp.error; } 2> time.txt" >> auto_fast_dp.log
#        echo "fast_dp --lib=$lib -1 $a -N $b $line" >> auto_fast_dp.log
        mkdir run$a-$b
        cd run$a-$b
        { time fast_dp --lib=$lib -1 $a -N $b $line 2> fast_dp.error; } 2> time.txt
#        fast_dp --lib=$lib -1 $a -N $b $line
        if [ ! -s fast_dp.error ]; then rm fast_dp.error; fi
        cd ..
        a=`expr $a + $1`
        b=`expr $b + $1`
    done
    cd $work_dir
done < tmpautofdp.dat
rm tmpautofdp.dat
touch good_runs.txt
find -name "XDS_ASCII.HKL" > good_runs.txt