Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NoRouteToHostException error from annotate_vep_mnv.py #3

Open
ansontcw opened this issue Mar 3, 2022 · 0 comments
Open

NoRouteToHostException error from annotate_vep_mnv.py #3

ansontcw opened this issue Mar 3, 2022 · 0 comments

Comments

@ansontcw
Copy link

ansontcw commented Mar 3, 2022

Hello,

I am trying to annotate the hail table after running get_mnv.py on a vcf, but hail gives an error as follow:

hail.utils.java.FatalError: NoRouteToHostException: No route to host (Host unreachable)

May I know if it means the vep config file cannot be accessed?
The config file specified in the script is:
vep_config = "gs://gnomad-resources/loftee-beta/vep85-loftee-gcloud.json"

I also tried using another config file specified here, yet the same error popped out:
vep_config = "gs://hail-us-vep/vep85-loftee-gcloud.json"

Looking forward to your advice. Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant