bibliography.bib

@inproceedings{Hozza2015,
  author={Michal Hozza and Tomáš Vinař and Broňa Brejová},
  title={{How Big is That Genome? Estimating Genome Size and Coverage from k-mer Abundance Spectra}},
  booktitle={String Processing and Information Retrieval (SPIRE)},
  volume={9309},
  series={Lecture Notes in Computer Science},
  pages={199--209},
  address={London, UK},
  month={September},
  year={2015},
  publisher={Springer}
}

@phdthesis{Hozza2016,
  author = {Michal Hozza},
  title  = {Algorithms and Models for Analysis of DNA Sequencing Data},
  school = {Univerzita Komenského v Bratislave},
  year   = {2016},
  note   = {Unfinished unpublished thesis, retrieved from \url{https://github.com/mhozza/dissertation}}
}

@article{Sivadasan2016,
  author    = {Naveen Sivadasan and Rajgopal Srinivasan and Kshama Goyal},
  title     = {Kmerlight: fast and accurate k-mer abundance estimation},
  journal   = {CoRR},
  volume    = {abs/1609.05626},
  year      = {2016},

  url       = {http://arxiv.org/abs/1609.05626},
  timestamp = {Mon, 03 Oct 2016 17:51:10 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/SivadasanSG16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@article{Melsted2014,
  author    = {Páll Melsted and Bjarni V. Halldórsson},
  title     = {KmerStream: streaming algorithms for k-mer abundance estimation},
  journal   = {Bioinformatics},
  volume    = {30},
  number    = {24},
  pages     = {3541--3547},
  year      = {2014}
}

@misc{WikiStreamingAlg,
   title = "Streaming algorithm. {I}n {W}ikipedia{,} The Free Encyclopedia",
   author = "Wikipedia",
   year = "2017",
   url = "\url{https://en.wikipedia.org/wiki/Streaming_algorithm}",
   note = "Retrieved April 18, 2017, from \url{https://en.wikipedia.org/wiki/Streaming_algorithm}"
 }

@misc{WikiMedian,
   title = "Median. {I}n {W}ikipedia{,} The Free Encyclopedia",
   author = "Wikipedia",
   year = "2017",
   url = "\url{https://en.wikipedia.org/wiki/Median#Sampling_distribution}",
   note = "Retrieved May 12, 2017, from \url{https://en.wikipedia.org/wiki/Median#Sampling_distribution}"
 }

article{Zhang2014,
  author  = {Zhang Qingpeng et al.},
  title   = {These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure.},
  journal = {PLoS ONE},
  volume  = {9},
  number  = {7},
  year    = {2014}
}

@article{Chikhi2013,
  author = {Rayan Chikhi and Paul Medvedev},
  title = {Informed and automated k-mer size selection for genome assembly},
  journal = {Bioinformatics},
  volume = {30},
  number = {1},
  pages = {31},
  year = {2013},
  doi = {10.1093/bioinformatics/btt310},
}

@article{Melsted2011,
  author = {P\'{a}ll Melsted and Jonathan Pritchard},
  title = {Efficient counting of k-mers in {DNA} sequences using a bloom filter},
  doi = {10.1186/1471-2105-12-333},
  issn = {1471-2105},
  journal = {BMC Bioinformatics},
  number = 1,
  pages = 333,
  pubmedid = {21831268},
  timestamp = {2013-01-30T19:37:46.000+0100},
  volume = 12,
  year = 2011
}

@article{Marcais2011,
  author = {Guillaume Marçais and Carl Kingsford},
  title = {A fast, lock-free approach for efficient parallel counting of occurrences of k-mers},
  journal = {Bioinformatics},
  volume = {27},
  number = {6},
  pages = {764},
  year = {2011},
  doi = {10.1093/bioinformatics/btr011},
}

@article{Rizk2013,
  TITLE = {{DSK: k-mer counting with very low memory usage}},
  AUTHOR = {Rizk, Guillaume and Lavenier, Dominique and Chikhi, Rayan},
  URL = {https://hal.archives-ouvertes.fr/hal-00778473},
  JOURNAL = {{Bioinformatics}},
  VOLUME = {29},
  NUMBER = {5},
  PAGES = {652-653},
  YEAR = {2013},
  MONTH = Jan,
  DOI = {10.1093/bioinformatics/btt020},
}

@Article{Kurtz2008,
  author={Stefan Kurtz et al.},
  title={A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes},
  journal={BMC Genomics},
  year={2008},
  volume={9},
  number={1},
  pages={517},
  issn={1471-2164},
  doi={10.1186/1471-2164-9-517},
  url={http://dx.doi.org/10.1186/1471-2164-9-517}
}

@Article{Williams2013,
  author={David Williams et al.},
  title={Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes},
  journal={BMC Genomics},
  year={2013},
  volume={14},
  number={1},
  pages={537},
  issn={1471-2164},
  doi={10.1186/1471-2164-14-537},
  url={http://dx.doi.org/10.1186/1471-2164-14-537}
}

@inproceedings{Bar-Yossef2002,
 author = {Ziv Bar-Yossef et al.},
 title = {Counting Distinct Elements in a Data Stream},
 booktitle = {Proceedings of the 6th International Workshop on Randomization and Approximation Techniques},
 series = {RANDOM '02},
 year = {2002},
 isbn = {3-540-44147-6},
 pages = {1--10},
 numpages = {10},
 url = {http://dl.acm.org/citation.cfm?id=646978.711822},
 acmid = {711822},
 publisher = {Springer-Verlag},
 address = {London, UK, UK},
} 

@article{Rider1960,
author = { Paul R.  Rider },
title = {Variance of the Median of Small Samples from Several Special Populations},
journal = {Journal of the American Statistical Association},
volume = {55},
number = {289},
pages = {148-150},
year = {1960},
doi = {10.1080/01621459.1960.10482056},
}