TauDEM.yaml

on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: Check Package

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  TauDEM:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,   r: 'release'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v3

      - name: Install required pkgs for linux
        if: runner.os == 'Linux'
        run: |
          sudo apt-get update
          sudo apt-get install gdal-bin libgdal-dev mpich

      - name: Install required pkgs for mac
        if: runner.os == 'macOS'
        run: |
          brew install gdal mpich

      - name: Install TauDEM on linux and mac
        if: runner.os != 'Windows'
        run: sh ./TauDEM.sh

      - name: Install TauDEM on Windows
        if: runner.os == 'Windows'
        run: |
          cd ~
          curl -sLO https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe
          Start-Process -Wait ".\msmpisetup.exe" -ArgumentList "-unattend"
          curl -sLO https://build2.gisinternals.com/sdk/downloads/release-1800-x64-gdal-2-1-3-mapserver-7-0-4/gdal-201-1800-x64-core.msi
          Start-Process -Wait msiexec.exe -ArgumentList "/I gdal-201-1800-x64-core.msi /quiet"
          mkdir "C:\taudem"
          cd "C:\taudem"
          curl -sLO https://github.com/dtarb/TauDEM/releases/download/v5.3.7/TauDEM537exeWin64.zip
          unzip TauDEM537exeWin64.zip

      # - name: Test Taudem
      #   if: runner.os == 'Windows'
      #   run: |
      #     $env:Path += ";C:\Program Files\Microsoft MPI\Bin;C:\Program Files\GDAL;C:\taudem"
      #     gdalinfo --version
      #     mpiexec pitremove inst\test-data\DEM.tif

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check

      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true