From 34468aaa8decb8a18fc6d5e1c8f8c0e99f4bd450 Mon Sep 17 00:00:00 2001
From: "Lee - spacestation4.cdc.gov" <gzu2@cdc.gov>
Date: Fri, 29 Jan 2016 09:07:33 -0500
Subject: [PATCH] corrected values for default DP4

---
 scripts/set_fixVcf.pl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/scripts/set_fixVcf.pl b/scripts/set_fixVcf.pl
index 966df94..f3c0652 100755
--- a/scripts/set_fixVcf.pl
+++ b/scripts/set_fixVcf.pl
@@ -354,6 +354,7 @@ sub fixVcfLine{
         $y{gtypes}{$samplename}{DP4}=$y{INFO}{DP4};
         delete($y{INFO}{DP4});
       } 
+      $y{gtypes}{$samplename}{DP4}||=join(",",qw(. . . .));
       # If it wasn't defined before, set it up
       $y{gtypes}{$samplename}{DP4}=join(",",
         $y{gtypes}{$samplename}{RDF},