diff --git a/RMarkdown/Supplemental.Rmd b/RMarkdown/Supplemental.Rmd index 5ab1b0a..1463d0a 100644 --- a/RMarkdown/Supplemental.Rmd +++ b/RMarkdown/Supplemental.Rmd @@ -16,9 +16,12 @@ library(metafor) ``` # Supplemental materials -Supplemental Figures S1-15 and Tables S3-9 for Ossanna & Gornish (2022), "Efficacy of labile carbon addition to reduce fast-growing, exotic invasive plants: A review and meta-analysis" +Supplemental materials for Ossanna & Gornish (2022), "Efficacy of labile carbon addition to reduce fast-growing, exotic invasive plants: A review and meta-analysis". \ -## Table S3. Systematic review: Publication types +**Table S1 & S2. Raw data** +See accompanying Zenodo archive for Tables S1 & S2, and R Markdown documents detailing analysis and code. \ + +**Table S3. Systematic review: Publication types** ```{r} peer$perc <- round(peer$perc, 1) peer$peer <- c("conference", "doctoral dissertation", "peer-reviewed article", "technical report", "master's thesis") @@ -29,7 +32,9 @@ peer %>% kable_classic(full_width = FALSE, latex_options = "HOLD_position") ``` -## Table S4. Systematic review: Study regions +\ + +**Table S4. Systematic review: Study regions** ```{r} reg$perc <- round(reg$perc, 1) colnames(reg) <- c("Region", "n", "Percent (%)") @@ -49,7 +54,8 @@ hist(plot.na$plot, breaks = 50, xlab = expression(paste("Plot size (m"^2*")")), ``` **Figure S2.** Plot size for systematic review. -## Table S5. Systematic review: C types +\newpage +**Table S5. Systematic review: C types** ```{r} ctypa$perc <- round(ctypa$perc, 1) colnames(ctypa) <- c("C type", "n", "Percent (%)") @@ -62,9 +68,11 @@ ctypa %>% ```{r, fig.height=5} hist(cratav.na$cratav, breaks = 50, xlab = expression(paste("C rate (g C m"^-2*" y"^-1*")")), main = NULL) ``` -**Figure S3.** Average C rate for systematic review. +**Figure S3.** Average C rate for systematic review. \ + +\ -## Table S6. Systematic review: Number of treatment combinations with C addition +**Table S6.** Systematic review: Number of treatment combinations with C addition ```{r} mtrtn$perc <- round(mtrtn$perc, 1) mtrtn$mtrtn <- c("C addition only", "1 additional treatment", "2 additional treatments", "3 additional treatments") @@ -75,7 +83,8 @@ mtrtn %>% kable_classic(full_width = FALSE, latex_options = "HOLD_position") ``` -## Table S7. Systematic review: Types of treatment combinations with C addition +\newpage +**Table S7. Systematic review: Types of treatment combinations with C addition** ```{r} mtrt$perc <- round(mtrt$perc, 1) colnames(mtrt) <- c("Additional treatments", "n", "Percent (%)") @@ -85,7 +94,9 @@ mtrt %>% kable_classic(full_width = FALSE, latex_options = "HOLD_position") ``` -## Table S8. Systematic review: Inclusion of cost +\ + +**Table S8. Systematic review: Inclusion of cost** ```{r} cost$perc <- round(cost$perc, 1) cost$cost <- c("absent", "discussed in context of results", "mentioned briefly", "quantitative estimate") @@ -207,10 +218,8 @@ forest.cat(nt, "plant_anper", nt.mv, nt.mv.panp, h) ``` **Figure S15.** Standardized mean Hedges’ *g* effect size $\pm$ 95% confidence interval (CI) for exotic (A) and native plant abundance (B) in response to C addition, categorized by plant duration (annual/perennial), with number of comparisons *k*. CIs that do not overlap zero are considered significant. - - - -## Table S9. Meta-analysis: Heterogeneity statistics +\newpage +**Table S9. Meta-analysis: Heterogeneity statistics** ```{r} hetero %>% kbl(longtable = TRUE, booktabs = TRUE) %>% diff --git a/RMarkdown/Supplemental.pdf b/RMarkdown/Supplemental.pdf index debeb6c..18ccd84 100644 Binary files a/RMarkdown/Supplemental.pdf and b/RMarkdown/Supplemental.pdf differ diff --git a/data/raw/Table-S1_metadata.txt b/data/raw/Table-S1_review_metadata.txt similarity index 100% rename from data/raw/Table-S1_metadata.txt rename to data/raw/Table-S1_review_metadata.txt diff --git a/data/raw/Table-S2_metadata.txt b/data/raw/Table-S2_meta-analysis_metadata.txt similarity index 100% rename from data/raw/Table-S2_metadata.txt rename to data/raw/Table-S2_meta-analysis_metadata.txt