#Phylo3D - 3D Phylogenetic Tree Visualization Unofficial source imprort of Phylo3D written by Tim Hughes.
master branch contains compatibility update for JDK 1.6+ and fix for memory leak while processing huge files.
To produce graphs
java -Xmx2g -cp src/.:dists/ATVapp.jar phylo3D.datafiles.DataFilesUpdater
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-48
http://www.caida.org/tools/visualization/walrus/
ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/