You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Dec 9, 2023. It is now read-only.
I am experiencing some assertion error when using mergevcf. This error happens when I process chrX. Other chromosomes do not return such error, but since chrX is rather large, I would like to include it in the analysis as much as possible.
File "/anaconda3/envs/mergevcf/bin/mergevcf", line 11, in <module>
load_entry_point('mergevcf==1.0.1', 'console_scripts', 'mergevcf')()
File "build/bdist.linux-x86_64/egg/mergevcf/__init__.py", line 33, in main
File "build/bdist.linux-x86_64/egg/mergevcf/mergedfile.py", line 117, in merge
File "build/bdist.linux-x86_64/egg/mergevcf/variantdict.py", line 174, in addrecord
File "build/bdist.linux-x86_64/egg/mergevcf/vcftobreakpoints.py", line 224, in breakpointsFromRecord
File "build/bdist.linux-x86_64/egg/mergevcf/vcftobreakpoints.py", line 128, in translocation
File "build/bdist.linux-x86_64/egg/mergevcf/locations.py", line 10, in __init__
AssertionError
May I ask that if mergvcf supports chrX, and what can I do if I would like to include it in the analysis?
I cloned, built and installed the package from scratch, and I am using Python 2.7.15.
Many thanks in advance.
Kind regards,
Yuyao
The text was updated successfully, but these errors were encountered:
Dear maintainer,
I am experiencing some assertion error when using mergevcf. This error happens when I process chrX. Other chromosomes do not return such error, but since chrX is rather large, I would like to include it in the analysis as much as possible.
May I ask that if mergvcf supports chrX, and what can I do if I would like to include it in the analysis?
I cloned, built and installed the package from scratch, and I am using Python 2.7.15.
Many thanks in advance.
Kind regards,
Yuyao
The text was updated successfully, but these errors were encountered: