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XdmfRegularGrid.cpp
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/*****************************************************************************/
/* XDMF */
/* eXtensible Data Model and Format */
/* */
/* Id : XdmfRegularGrid.cpp */
/* */
/* Author: */
/* Kenneth Leiter */
/* [email protected] */
/* US Army Research Laboratory */
/* Aberdeen Proving Ground, MD */
/* */
/* Copyright @ 2011 US Army Research Laboratory */
/* All Rights Reserved */
/* See Copyright.txt for details */
/* */
/* This software is distributed WITHOUT ANY WARRANTY; without */
/* even the implied warranty of MERCHANTABILITY or FITNESS */
/* FOR A PARTICULAR PURPOSE. See the above copyright notice */
/* for more information. */
/* */
/*****************************************************************************/
#include <cmath>
#include "XdmfArray.hpp"
#include "XdmfGeometry.hpp"
#include "XdmfGeometryType.hpp"
#include "XdmfRegularGrid.hpp"
#include "XdmfTopology.hpp"
#include "XdmfTopologyType.hpp"
#include "XdmfError.hpp"
/**
* PIMPL
*/
class XdmfRegularGrid::XdmfRegularGridImpl : public XdmfGridImpl {
public:
class XdmfGeometryRegular : public XdmfGeometry
{
public:
static shared_ptr<XdmfGeometryRegular>
New(XdmfRegularGrid * const regularGrid)
{
shared_ptr<XdmfGeometryRegular> p(new XdmfGeometryRegular(regularGrid));
return p;
}
unsigned int
getNumberPoints() const
{
const shared_ptr<const XdmfArray> dimensions =
mRegularGrid->getDimensions();
if(dimensions->getSize() == 0) {
return 0;
}
unsigned int toReturn = 1;
for(unsigned int i=0; i<dimensions->getSize(); ++i) {
toReturn *= dimensions->getValue<unsigned int>(i);
}
return toReturn;
}
bool isInitialized() const
{
return true;
}
void
traverse(const shared_ptr<XdmfBaseVisitor> visitor)
{
shared_ptr<XdmfArray> origin = mRegularGrid->getOrigin();
shared_ptr<XdmfArray> brickSize = mRegularGrid->getBrickSize();
origin->accept(visitor);
brickSize->accept(visitor);
}
private:
XdmfGeometryRegular(XdmfRegularGrid * const regularGrid) :
mRegularGrid(regularGrid)
{
this->setType(XdmfGeometryTypeRegular::New(mRegularGrid));
}
XdmfRegularGrid * const mRegularGrid;
};
class XdmfGeometryTypeRegular : public XdmfGeometryType
{
public:
static shared_ptr<const XdmfGeometryTypeRegular>
New(const XdmfRegularGrid * const regularGrid)
{
shared_ptr<const XdmfGeometryTypeRegular>
p(new XdmfGeometryTypeRegular(regularGrid));
return p;
}
unsigned int
getDimensions() const
{
return mRegularGrid->getDimensions()->getSize();
}
void
getProperties(std::map<std::string, std::string> & collectedProperties) const
{
const unsigned int dimensions = this->getDimensions();
if(dimensions == 3) {
collectedProperties["Type"] = "ORIGIN_DXDYDZ";
}
else if(dimensions == 2) {
collectedProperties["Type"] = "ORIGIN_DXDY";
}
else {
collectedProperties["Type"] = "ORIGIN_DISPLACEMENT";
// XdmfError::message(XdmfError::FATAL, "Dimensions not 2 or 3 in XdmfGeometryTypeRegular::getProperties");
}
}
private:
XdmfGeometryTypeRegular(const XdmfRegularGrid * const regularGrid) :
XdmfGeometryType("", 0),
mRegularGrid(regularGrid)
{
}
const XdmfRegularGrid * const mRegularGrid;
};
class XdmfTopologyRegular : public XdmfTopology
{
public:
static shared_ptr<XdmfTopologyRegular>
New(const XdmfRegularGrid * const regularGrid)
{
shared_ptr<XdmfTopologyRegular> p(new XdmfTopologyRegular(regularGrid));
return p;
}
bool isInitialized() const
{
return true;
}
unsigned int
getNumberElements() const
{
const shared_ptr<const XdmfArray> dimensions =
mRegularGrid->getDimensions();
if(dimensions->getSize() == 0) {
return 0;
}
unsigned int toReturn = 1;
for(unsigned int i=0; i<dimensions->getSize(); ++i) {
toReturn *= (dimensions->getValue<unsigned int>(i) - 1);
}
return toReturn;
}
private:
XdmfTopologyRegular(const XdmfRegularGrid * const regularGrid) :
mRegularGrid(regularGrid)
{
this->setType(XdmfTopologyTypeRegular::New(regularGrid));
}
const XdmfRegularGrid * const mRegularGrid;
};
class XdmfTopologyTypeRegular : public XdmfTopologyType
{
public:
static shared_ptr<const XdmfTopologyTypeRegular>
New(const XdmfRegularGrid * const regularGrid)
{
shared_ptr<const XdmfTopologyTypeRegular>
p(new XdmfTopologyTypeRegular(regularGrid));
return p;
}
unsigned int
getEdgesPerElement() const
{
return calculateHypercubeNumElements(mRegularGrid->getDimensions()->getSize(), 1);
}
unsigned int
getFacesPerElement() const
{
return calculateHypercubeNumElements(mRegularGrid->getDimensions()->getSize(), 2);
}
unsigned int
getNodesPerElement() const
{
return calculateHypercubeNumElements(mRegularGrid->getDimensions()->getSize(), 0);
}
void
getProperties(std::map<std::string, std::string> & collectedProperties) const
{
shared_ptr<const XdmfArray> dimensions = mRegularGrid->getDimensions();
if(dimensions->getSize() == 3){
collectedProperties["Type"] = "3DCoRectMesh";
}
else if(dimensions->getSize() == 2) {
collectedProperties["Type"] = "2DCoRectMesh";
}
else {
// If not 2 or 3 just mark it as a mesh of unknown dims
collectedProperties["Type"] = "CoRectMesh";
// XdmfError::message(XdmfError::FATAL,
// "Dimensions not 2 or 3 in "
// "XdmfTopologyTypeRegular::getProperties");
}
collectedProperties["Dimensions"] = dimensions->getValuesString();
}
private:
XdmfTopologyTypeRegular(const XdmfRegularGrid * const regularGrid) :
XdmfTopologyType(0, 0, std::vector<shared_ptr<const XdmfTopologyType> >(), 0, "foo", XdmfTopologyType::Structured, 0x1102),
mRegularGrid(regularGrid)
{
}
const XdmfRegularGrid * const mRegularGrid;
};
XdmfRegularGridImpl(const shared_ptr<XdmfArray> brickSize,
const shared_ptr<XdmfArray> numPoints,
const shared_ptr<XdmfArray> origin) :
mBrickSize(brickSize),
mDimensions(numPoints),
mOrigin(origin)
{
mGridType = "Regular";
}
XdmfGridImpl * duplicate()
{
return new XdmfRegularGridImpl(mBrickSize, mDimensions, mOrigin);
}
shared_ptr<XdmfArray> mBrickSize;
shared_ptr<XdmfArray> mDimensions;
shared_ptr<XdmfArray> mOrigin;
};
shared_ptr<XdmfRegularGrid>
XdmfRegularGrid::New(const double xBrickSize,
const double yBrickSize,
const unsigned int xNumPoints,
const unsigned int yNumPoints,
const double xOrigin,
const double yOrigin)
{
shared_ptr<XdmfArray> brickSize = XdmfArray::New();
brickSize->initialize<double>(2);
brickSize->insert(0, xBrickSize);
brickSize->insert(1, yBrickSize);
shared_ptr<XdmfArray> numPoints = XdmfArray::New();
numPoints->initialize<unsigned int>(2);
numPoints->insert(0, xNumPoints);
numPoints->insert(1, yNumPoints);
shared_ptr<XdmfArray> origin = XdmfArray::New();
origin->initialize<double>(2);
origin->insert(0, xOrigin);
origin->insert(1, yOrigin);
shared_ptr<XdmfRegularGrid> p(new XdmfRegularGrid(brickSize,
numPoints,
origin));
return p;
}
shared_ptr<XdmfRegularGrid>
XdmfRegularGrid::New(const double xBrickSize,
const double yBrickSize,
const double zBrickSize,
const unsigned int xNumPoints,
const unsigned int yNumPoints,
const unsigned int zNumPoints,
const double xOrigin,
const double yOrigin,
const double zOrigin)
{
shared_ptr<XdmfArray> brickSize = XdmfArray::New();
brickSize->initialize<double>(3);
brickSize->insert(0, xBrickSize);
brickSize->insert(1, yBrickSize);
brickSize->insert(2, zBrickSize);
shared_ptr<XdmfArray> numPoints = XdmfArray::New();
numPoints->initialize<unsigned int>(3);
numPoints->insert(0, xNumPoints);
numPoints->insert(1, yNumPoints);
numPoints->insert(2, zNumPoints);
shared_ptr<XdmfArray> origin = XdmfArray::New();
origin->initialize<double>(3);
origin->insert(0, xOrigin);
origin->insert(1, yOrigin);
origin->insert(2, zOrigin);
shared_ptr<XdmfRegularGrid> p(new XdmfRegularGrid(brickSize,
numPoints,
origin));
return p;
}
shared_ptr<XdmfRegularGrid>
XdmfRegularGrid::New(const shared_ptr<XdmfArray> brickSize,
const shared_ptr<XdmfArray> numPoints,
const shared_ptr<XdmfArray> origin)
{
shared_ptr<XdmfRegularGrid> p(new XdmfRegularGrid(brickSize,
numPoints,
origin));
return p;
}
XdmfRegularGrid::XdmfRegularGrid(const shared_ptr<XdmfArray> brickSize,
const shared_ptr<XdmfArray> numPoints,
const shared_ptr<XdmfArray> origin) :
XdmfGrid(XdmfRegularGridImpl::XdmfGeometryRegular::New(this),
XdmfRegularGridImpl::XdmfTopologyRegular::New(this))
{
mImpl = new XdmfRegularGridImpl(brickSize, numPoints, origin);
}
XdmfRegularGrid::XdmfRegularGrid(XdmfRegularGrid & refGrid) :
XdmfGrid(refGrid)
{
mGeometry = XdmfRegularGridImpl::XdmfGeometryRegular::New(this);
mTopology = XdmfRegularGridImpl::XdmfTopologyRegular::New(this);
}
XdmfRegularGrid::~XdmfRegularGrid()
{
if (mImpl) {
delete mImpl;
}
mImpl = NULL;
}
const std::string XdmfRegularGrid::ItemTag = "Grid";
void
XdmfRegularGrid::copyGrid(shared_ptr<XdmfGrid> sourceGrid)
{
XdmfGrid::copyGrid(sourceGrid);
if (shared_ptr<XdmfRegularGrid> classedGrid = shared_dynamic_cast<XdmfRegularGrid>(sourceGrid))
{
// Copy stucture from read grid to this grid
this->setOrigin(classedGrid->getOrigin());
this->setDimensions(classedGrid->getDimensions());
this->setBrickSize(classedGrid->getBrickSize());
}
}
shared_ptr<XdmfArray>
XdmfRegularGrid::getBrickSize()
{
return boost::const_pointer_cast<XdmfArray>
(static_cast<const XdmfRegularGrid &>(*this).getBrickSize());
}
shared_ptr<const XdmfArray>
XdmfRegularGrid::getBrickSize() const
{
return ((XdmfRegularGridImpl *)mImpl)->mBrickSize;
}
shared_ptr<XdmfArray>
XdmfRegularGrid::getDimensions()
{
return boost::const_pointer_cast<XdmfArray>
(static_cast<const XdmfRegularGrid &>(*this).getDimensions());
}
shared_ptr<const XdmfArray>
XdmfRegularGrid::getDimensions() const
{
return ((XdmfRegularGridImpl *)mImpl)->mDimensions;
}
shared_ptr<XdmfArray>
XdmfRegularGrid::getOrigin()
{
return boost::const_pointer_cast<XdmfArray>
(static_cast<const XdmfRegularGrid &>(*this).getOrigin());
}
shared_ptr<const XdmfArray>
XdmfRegularGrid::getOrigin() const
{
return ((XdmfRegularGridImpl *)mImpl)->mOrigin;
}
void
XdmfRegularGrid::populateItem(const std::map<std::string, std::string> & itemProperties,
const std::vector<shared_ptr<XdmfItem> > & childItems,
const XdmfCoreReader * const reader)
{
XdmfGrid::populateItem(itemProperties, childItems, reader);
for(std::vector<shared_ptr<XdmfItem> >::const_iterator iter =
childItems.begin();
iter != childItems.end();
++iter) {
if(shared_ptr<XdmfRegularGrid> regularGrid =
shared_dynamic_cast<XdmfRegularGrid>(*iter)) {
if(regularGrid->getBrickSize()) {
((XdmfRegularGridImpl *)mImpl)->mBrickSize = regularGrid->getBrickSize();
}
if(regularGrid->getDimensions()) {
((XdmfRegularGridImpl *)mImpl)->mDimensions = regularGrid->getDimensions();
}
if(regularGrid->getOrigin()) {
((XdmfRegularGridImpl *)mImpl)->mOrigin = regularGrid->getOrigin();
}
}
}
}
void
XdmfRegularGrid::read()
{
if (mGridController)
{
if (shared_ptr<XdmfRegularGrid> grid = shared_dynamic_cast<XdmfRegularGrid>(mGridController->read()))
{
// Copy stucture from read grid to this grid
copyGrid(grid);
}
else if (shared_dynamic_cast<XdmfGrid>(mGridController->read()))
{
XdmfError::message(XdmfError::FATAL, "Error: Grid Type Mismatch");
}
else
{
XdmfError::message(XdmfError::FATAL, "Error: Invalid Grid Reference");
}
}
}
void
XdmfRegularGrid::release()
{
XdmfGrid::release();
this->setOrigin(shared_ptr<XdmfArray>());
this->setDimensions(shared_ptr<XdmfArray>());
this->setBrickSize(shared_ptr<XdmfArray>());
}
void
XdmfRegularGrid::setBrickSize(const shared_ptr<XdmfArray> brickSize)
{
((XdmfRegularGridImpl *)mImpl)->mBrickSize = brickSize;
this->setIsChanged(true);
}
void
XdmfRegularGrid::setDimensions(const shared_ptr<XdmfArray> dimensions)
{
((XdmfRegularGridImpl *)mImpl)->mDimensions = dimensions;
this->setIsChanged(true);
}
void
XdmfRegularGrid::setOrigin(const shared_ptr<XdmfArray> origin)
{
((XdmfRegularGridImpl *)mImpl)->mOrigin = origin;
this->setIsChanged(true);
}
// C Wrappers
XDMFREGULARGRID * XdmfRegularGridNew2D(double xBrickSize,
double yBrickSize,
unsigned int xNumPoints,
unsigned int yNumPoints,
double xOrigin,
double yOrigin)
{
try
{
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(xBrickSize,
yBrickSize,
xNumPoints,
yNumPoints,
xOrigin,
yOrigin);
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
catch (...)
{
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(xBrickSize,
yBrickSize,
xNumPoints,
yNumPoints,
xOrigin,
yOrigin);
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
}
XDMFREGULARGRID * XdmfRegularGridNew3D(double xBrickSize,
double yBrickSize,
double zBrickSize,
unsigned int xNumPoints,
unsigned int yNumPoints,
unsigned int zNumPoints,
double xOrigin,
double yOrigin,
double zOrigin)
{
try
{
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(xBrickSize,
yBrickSize,
zBrickSize,
xNumPoints,
yNumPoints,
zNumPoints,
xOrigin,
yOrigin,
zOrigin);
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
catch (...)
{
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(xBrickSize,
yBrickSize,
zBrickSize,
xNumPoints,
yNumPoints,
zNumPoints,
xOrigin,
yOrigin,
zOrigin);
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
}
XDMFREGULARGRID * XdmfRegularGridNew(XDMFARRAY * brickSize,
XDMFARRAY * numPoints,
XDMFARRAY * origin,
int passControl)
{
try
{
if (passControl) {
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(shared_ptr<XdmfArray>((XdmfArray *)brickSize),
shared_ptr<XdmfArray>((XdmfArray *)numPoints),
shared_ptr<XdmfArray>((XdmfArray *)origin));
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
else {
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(shared_ptr<XdmfArray>((XdmfArray *)brickSize, XdmfNullDeleter()),
shared_ptr<XdmfArray>((XdmfArray *)numPoints, XdmfNullDeleter()),
shared_ptr<XdmfArray>((XdmfArray *)origin, XdmfNullDeleter()));
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
}
catch (...)
{
if (passControl) {
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(shared_ptr<XdmfArray>((XdmfArray *)brickSize),
shared_ptr<XdmfArray>((XdmfArray *)numPoints),
shared_ptr<XdmfArray>((XdmfArray *)origin));
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
else {
shared_ptr<XdmfRegularGrid> generatedGrid = XdmfRegularGrid::New(shared_ptr<XdmfArray>((XdmfArray *)brickSize, XdmfNullDeleter()),
shared_ptr<XdmfArray>((XdmfArray *)numPoints, XdmfNullDeleter()),
shared_ptr<XdmfArray>((XdmfArray *)origin, XdmfNullDeleter()));
return (XDMFREGULARGRID *)((void *)((XdmfItem *)(new XdmfRegularGrid(*generatedGrid.get()))));
}
}
}
XDMFARRAY * XdmfRegularGridGetBrickSize(XDMFREGULARGRID * grid, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
shared_ptr<XdmfArray> generatedBrick = gridPointer->getBrickSize();
return (XDMFARRAY *)((void *)(generatedBrick.get()));
XDMF_ERROR_WRAP_END(status)
return NULL;
}
XDMFARRAY * XdmfRegularGridGetDimensions(XDMFREGULARGRID * grid, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
shared_ptr<XdmfArray> generatedDimensions = gridPointer->getDimensions();
return (XDMFARRAY *)((void *)(generatedDimensions.get()));
XDMF_ERROR_WRAP_END(status)
return NULL;
}
XDMFARRAY * XdmfRegularGridGetOrigin(XDMFREGULARGRID * grid, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
shared_ptr<XdmfArray> generatedOrigin = gridPointer->getOrigin();
return (XDMFARRAY *)((void *)(generatedOrigin.get()));
XDMF_ERROR_WRAP_END(status)
return NULL;
}
void XdmfRegularGridSetBrickSize(XDMFREGULARGRID * grid, XDMFARRAY * brickSize, int passControl, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
if (passControl) {
gridPointer->setBrickSize(shared_ptr<XdmfArray>((XdmfArray *)brickSize));
}
else {
gridPointer->setBrickSize(shared_ptr<XdmfArray>((XdmfArray *)brickSize, XdmfNullDeleter()));
}
XDMF_ERROR_WRAP_END(status)
}
void XdmfRegularGridSetDimensions(XDMFREGULARGRID * grid, XDMFARRAY * dimensions, int passControl, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
if (passControl) {
gridPointer->setDimensions(shared_ptr<XdmfArray>((XdmfArray *)dimensions));
}
else {
gridPointer->setDimensions(shared_ptr<XdmfArray>((XdmfArray *)dimensions, XdmfNullDeleter()));
}
XDMF_ERROR_WRAP_END(status)
}
void XdmfRegularGridSetOrigin(XDMFREGULARGRID * grid, XDMFARRAY * origin, int passControl, int * status)
{
XDMF_ERROR_WRAP_START(status)
XdmfItem * classedPointer = (XdmfItem *)grid;
XdmfRegularGrid * gridPointer = dynamic_cast<XdmfRegularGrid *>(classedPointer);
if (passControl) {
gridPointer->setOrigin(shared_ptr<XdmfArray>((XdmfArray *)origin));
}
else {
gridPointer->setOrigin(shared_ptr<XdmfArray>((XdmfArray *)origin, XdmfNullDeleter()));
}
XDMF_ERROR_WRAP_END(status)
}
XDMF_ITEM_C_CHILD_WRAPPER(XdmfRegularGrid, XDMFREGULARGRID)
XDMF_GRID_C_CHILD_WRAPPER(XdmfRegularGrid, XDMFREGULARGRID)