diff --git a/Workshops/COMBINE_WA_2024.md b/Workshops/COMBINE_WA_2024.md index 753e755..8f606f4 100644 --- a/Workshops/COMBINE_WA_2024.md +++ b/Workshops/COMBINE_WA_2024.md @@ -252,14 +252,14 @@ For this patient, we sequenced several different samples. You can click on the l Sample | R1 or R2 | Number of sequences | Total length | Shortest | Longest | N50 | N75 | auN -- | -- | -- | -- | -- | -- | -- | -- | -- -[../Datasets/CF/788707_20171213_S_R1.fastq.gz](788707_20171213_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20171213_S_R2.fastq.gz](788707_20171213_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20180129_S_R1.fastq.gz](788707_20180129_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20180129_S_R2.fastq.gz](788707_20180129_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20180313_S_R2.fastq.gz](788707_20180313_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20180313_S_R1.fastq.gz](788707_20180313_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20181126_S_R1.fastq.gz](788707_20181126_S) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 -[../Datasets/CF/788707_20181126_S_R2.fastq.gz](788707_20181126_S) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20171213_S](../Datasets/CF/788707_20171213_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20171213_S](../Datasets/CF/788707_20171213_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20180129_S](../Datasets/CF/788707_20180129_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20180129_S](../Datasets/CF/788707_20180129_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20180313_S](../Datasets/CF/788707_20180313_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20180313_S](../Datasets/CF/788707_20180313_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20181126_S](../Datasets/CF/788707_20181126_S_R1.fastq.gz) | R1 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 +[788707_20181126_S](../Datasets/CF/788707_20181126_S_R2.fastq.gz) | R2 | 125,000 | 37,500,000 | 300 | 300 | 300 | 300 | 300 Download each of the datasets that we don't already have and put them in the `reads` directory. We are going to map all these reads to the contigs we have just created.