From 83d9221873df3df73ead27a4c8b7b3c60ec02374 Mon Sep 17 00:00:00 2001
From: Sujay Patil <sujaysanjeev.patil@gmail.com>
Date: Fri, 22 Nov 2024 11:00:30 -0800
Subject: [PATCH] update specific deps from pyproject.toml

---
 poetry.lock | 369 ++++++++++++++++++++++++++++------------------------
 1 file changed, 196 insertions(+), 173 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index fcd6ed7c..0d3cf738 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,20 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.1 and should not be changed by hand.
+
+[[package]]
+name = "annotated-types"
+version = "0.7.0"
+description = "Reusable constraint types to use with typing.Annotated"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
+    {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
+]
 
 [[package]]
 name = "antlr4-python3-runtime"
 version = "4.9.3"
 description = "ANTLR 4.9.3 runtime for Python 3.7"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -15,7 +25,6 @@ files = [
 name = "arrow"
 version = "1.2.3"
 description = "Better dates & times for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -30,7 +39,6 @@ python-dateutil = ">=2.7.0"
 name = "attrs"
 version = "22.2.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -49,7 +57,6 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy
 name = "beautifulsoup4"
 version = "4.12.0"
 description = "Screen-scraping library"
-category = "dev"
 optional = false
 python-versions = ">=3.6.0"
 files = [
@@ -68,7 +75,6 @@ lxml = ["lxml"]
 name = "certifi"
 version = "2022.12.7"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -80,7 +86,6 @@ files = [
 name = "cfgraph"
 version = "0.2.1"
 description = "rdflib collections flattening graph"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -94,7 +99,6 @@ rdflib = ">=0.4.2"
 name = "chardet"
 version = "5.1.0"
 description = "Universal encoding detector for Python 3"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -106,7 +110,6 @@ files = [
 name = "charset-normalizer"
 version = "3.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -191,7 +194,6 @@ files = [
 name = "click"
 version = "8.1.3"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -206,7 +208,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "codespell"
 version = "2.2.5"
 description = "Codespell"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -224,7 +225,6 @@ types = ["chardet (>=5.1.0)", "mypy", "pytest", "pytest-cov", "pytest-dependency
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -236,7 +236,6 @@ files = [
 name = "curies"
 version = "0.5.5"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -262,7 +261,6 @@ tests = ["coverage", "pytest"]
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -274,7 +272,6 @@ files = [
 name = "deprecated"
 version = "1.2.13"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -292,7 +289,6 @@ dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version
 name = "editorconfig"
 version = "0.12.3"
 description = "EditorConfig File Locator and Interpreter for Python"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -304,7 +300,6 @@ files = [
 name = "et-xmlfile"
 version = "1.1.0"
 description = "An implementation of lxml.xmlfile for the standard library"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -316,7 +311,6 @@ files = [
 name = "exceptiongroup"
 version = "1.1.1"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -331,7 +325,6 @@ test = ["pytest (>=6)"]
 name = "fqdn"
 version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 files = [
@@ -343,7 +336,6 @@ files = [
 name = "ghp-import"
 version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -361,7 +353,6 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 name = "graphviz"
 version = "0.20.1"
 description = "Simple Python interface for Graphviz"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -378,7 +369,6 @@ test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=
 name = "greenlet"
 version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
-category = "dev"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 files = [
@@ -387,7 +377,6 @@ files = [
     {file = "greenlet-2.0.2-cp27-cp27m-win32.whl", hash = "sha256:6c3acb79b0bfd4fe733dff8bc62695283b57949ebcca05ae5c129eb606ff2d74"},
     {file = "greenlet-2.0.2-cp27-cp27m-win_amd64.whl", hash = "sha256:283737e0da3f08bd637b5ad058507e578dd462db259f7f6e4c5c365ba4ee9343"},
     {file = "greenlet-2.0.2-cp27-cp27mu-manylinux2010_x86_64.whl", hash = "sha256:d27ec7509b9c18b6d73f2f5ede2622441de812e7b1a80bbd446cb0633bd3d5ae"},
-    {file = "greenlet-2.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:d967650d3f56af314b72df7089d96cda1083a7fc2da05b375d2bc48c82ab3f3c"},
     {file = "greenlet-2.0.2-cp310-cp310-macosx_11_0_x86_64.whl", hash = "sha256:30bcf80dda7f15ac77ba5af2b961bdd9dbc77fd4ac6105cee85b0d0a5fcf74df"},
     {file = "greenlet-2.0.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:26fbfce90728d82bc9e6c38ea4d038cba20b7faf8a0ca53a9c07b67318d46088"},
     {file = "greenlet-2.0.2-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9190f09060ea4debddd24665d6804b995a9c122ef5917ab26e1566dcc712ceeb"},
@@ -396,7 +385,6 @@ files = [
     {file = "greenlet-2.0.2-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:76ae285c8104046b3a7f06b42f29c7b73f77683df18c49ab5af7983994c2dd91"},
     {file = "greenlet-2.0.2-cp310-cp310-win_amd64.whl", hash = "sha256:2d4686f195e32d36b4d7cf2d166857dbd0ee9f3d20ae349b6bf8afc8485b3645"},
     {file = "greenlet-2.0.2-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:c4302695ad8027363e96311df24ee28978162cdcdd2006476c43970b384a244c"},
-    {file = "greenlet-2.0.2-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:d4606a527e30548153be1a9f155f4e283d109ffba663a15856089fb55f933e47"},
     {file = "greenlet-2.0.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c48f54ef8e05f04d6eff74b8233f6063cb1ed960243eacc474ee73a2ea8573ca"},
     {file = "greenlet-2.0.2-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:a1846f1b999e78e13837c93c778dcfc3365902cfb8d1bdb7dd73ead37059f0d0"},
     {file = "greenlet-2.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:3a06ad5312349fec0ab944664b01d26f8d1f05009566339ac6f63f56589bc1a2"},
@@ -426,7 +414,6 @@ files = [
     {file = "greenlet-2.0.2-cp37-cp37m-win32.whl", hash = "sha256:3f6ea9bd35eb450837a3d80e77b517ea5bc56b4647f5502cd28de13675ee12f7"},
     {file = "greenlet-2.0.2-cp37-cp37m-win_amd64.whl", hash = "sha256:7492e2b7bd7c9b9916388d9df23fa49d9b88ac0640db0a5b4ecc2b653bf451e3"},
     {file = "greenlet-2.0.2-cp38-cp38-macosx_10_15_x86_64.whl", hash = "sha256:b864ba53912b6c3ab6bcb2beb19f19edd01a6bfcbdfe1f37ddd1778abfe75a30"},
-    {file = "greenlet-2.0.2-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:1087300cf9700bbf455b1b97e24db18f2f77b55302a68272c56209d5587c12d1"},
     {file = "greenlet-2.0.2-cp38-cp38-manylinux2010_x86_64.whl", hash = "sha256:ba2956617f1c42598a308a84c6cf021a90ff3862eddafd20c3333d50f0edb45b"},
     {file = "greenlet-2.0.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fc3a569657468b6f3fb60587e48356fe512c1754ca05a564f11366ac9e306526"},
     {file = "greenlet-2.0.2-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:8eab883b3b2a38cc1e050819ef06a7e6344d4a990d24d45bc6f2cf959045a45b"},
@@ -435,7 +422,6 @@ files = [
     {file = "greenlet-2.0.2-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:b0ef99cdbe2b682b9ccbb964743a6aca37905fda5e0452e5ee239b1654d37f2a"},
     {file = "greenlet-2.0.2-cp38-cp38-win32.whl", hash = "sha256:b80f600eddddce72320dbbc8e3784d16bd3fb7b517e82476d8da921f27d4b249"},
     {file = "greenlet-2.0.2-cp38-cp38-win_amd64.whl", hash = "sha256:4d2e11331fc0c02b6e84b0d28ece3a36e0548ee1a1ce9ddde03752d9b79bba40"},
-    {file = "greenlet-2.0.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:8512a0c38cfd4e66a858ddd1b17705587900dd760c6003998e9472b77b56d417"},
     {file = "greenlet-2.0.2-cp39-cp39-macosx_11_0_x86_64.whl", hash = "sha256:88d9ab96491d38a5ab7c56dd7a3cc37d83336ecc564e4e8816dbed12e5aaefc8"},
     {file = "greenlet-2.0.2-cp39-cp39-manylinux2010_x86_64.whl", hash = "sha256:561091a7be172ab497a3527602d467e2b3fbe75f9e783d8b8ce403fa414f71a6"},
     {file = "greenlet-2.0.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:971ce5e14dc5e73715755d0ca2975ac88cfdaefcaab078a284fea6cfabf866df"},
@@ -456,7 +442,6 @@ test = ["objgraph", "psutil"]
 name = "hbreader"
 version = "0.9.1"
 description = "Honey Badger reader - a generic file/url/string open and read tool"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -468,7 +453,6 @@ files = [
 name = "idna"
 version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -480,7 +464,6 @@ files = [
 name = "importlib-metadata"
 version = "4.13.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -500,7 +483,6 @@ testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packag
 name = "importlib-resources"
 version = "6.0.1"
 description = "Read resources from Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -519,7 +501,6 @@ testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)",
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -531,7 +512,6 @@ files = [
 name = "isodate"
 version = "0.6.1"
 description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -546,7 +526,6 @@ six = "*"
 name = "isoduration"
 version = "20.11.0"
 description = "Operations with ISO 8601 durations"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -561,7 +540,6 @@ arrow = ">=0.15.0"
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -579,7 +557,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jsbeautifier"
 version = "1.14.7"
 description = "JavaScript unobfuscator and beautifier."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -594,7 +571,6 @@ six = ">=1.13.0"
 name = "json-flattener"
 version = "0.1.9"
 description = "Python library for denormalizing nested dicts or json objects to tables and back"
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -610,7 +586,6 @@ pyyaml = "*"
 name = "jsonasobj"
 version = "1.3.1"
 description = "JSON as python objects"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -622,7 +597,6 @@ files = [
 name = "jsonasobj2"
 version = "1.0.4"
 description = "JSON as python objects - version 2"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -637,7 +611,6 @@ hbreader = "*"
 name = "jsonpatch"
 version = "1.32"
 description = "Apply JSON-Patches (RFC 6902)"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -652,7 +625,6 @@ jsonpointer = ">=1.9"
 name = "jsonpath-ng"
 version = "1.5.3"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -670,7 +642,6 @@ six = "*"
 name = "jsonpointer"
 version = "2.3"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -682,7 +653,6 @@ files = [
 name = "jsonschema"
 version = "4.17.3"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -708,14 +678,13 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
 
 [[package]]
 name = "linkml"
-version = "1.6.11"
+version = "1.8.5"
 description = "Linked Open Data Modeling Language"
-category = "dev"
 optional = false
-python-versions = ">=3.8.1,<4.0.0"
+python-versions = "<4.0.0,>=3.8.1"
 files = [
-    {file = "linkml-1.6.11-py3-none-any.whl", hash = "sha256:a7f90f8cc5bd3d171812b23eebde04de3b4318ac4f48a5eae476ce890f09907c"},
-    {file = "linkml-1.6.11.tar.gz", hash = "sha256:963e88c1548c5462bc885e4cd96cabbda066866f8737bcc3bb92f4b0247419ae"},
+    {file = "linkml-1.8.5-py3-none-any.whl", hash = "sha256:5a45577a4bb380f3a128f45764545cb2da92dd3310a110de7dc5355796d5ac43"},
+    {file = "linkml-1.8.5.tar.gz", hash = "sha256:8f31834560ade4b7f1aebc973d22b31951d7061643d32bdcba258a650db9b140"},
 ]
 
 [package.dependencies]
@@ -728,11 +697,11 @@ jinja2 = ">=3.1.0"
 jsonasobj2 = ">=1.0.3,<2.0.0"
 jsonschema = {version = ">=4.0.0", extras = ["format"]}
 linkml-dataops = "*"
-linkml-runtime = ">=1.6.0"
+linkml-runtime = ">=1.8.1,<2.0.0"
 openpyxl = "*"
 parse = "*"
 prefixcommons = ">=0.1.7"
-prefixmaps = ">=0.1.3"
+prefixmaps = ">=0.2.2"
 pydantic = ">=1.0.0,<3.0.0"
 pyjsg = ">=0.11.6"
 pyshex = ">=0.7.20"
@@ -744,11 +713,16 @@ requests = ">=2.22"
 sqlalchemy = ">=1.4.31"
 watchdog = ">=0.9.0"
 
+[package.extras]
+black = ["black (>=24.0.0)"]
+numpydantic = ["numpydantic (>=1.6.1)"]
+shacl = ["pyshacl (>=0.25.0,<0.26.0)"]
+tests = ["black (>=24.0.0)", "numpydantic (>=1.6.1)", "pyshacl (>=0.25.0,<0.26.0)"]
+
 [[package]]
 name = "linkml-dataops"
 version = "0.1.0"
 description = "LinkML Data Operations API"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -765,14 +739,13 @@ linkml-runtime = ">=1.1.6"
 
 [[package]]
 name = "linkml-runtime"
-version = "1.6.3"
+version = "1.8.3"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
-category = "main"
 optional = false
-python-versions = ">=3.7.6,<4.0.0"
+python-versions = "<4.0,>=3.8"
 files = [
-    {file = "linkml_runtime-1.6.3-py3-none-any.whl", hash = "sha256:08f616302ce493be775104c87bd5a2ec0eb2c67624e611a3f7e28c978d08a4d1"},
-    {file = "linkml_runtime-1.6.3.tar.gz", hash = "sha256:88e3d0b776055723d187128c03527145dc1ffdc2d2a69e89f8aabce203d418a3"},
+    {file = "linkml_runtime-1.8.3-py3-none-any.whl", hash = "sha256:0750920f1348fffa903d99e7b5834ce425a2a538285aff9068dbd96d05caabd1"},
+    {file = "linkml_runtime-1.8.3.tar.gz", hash = "sha256:5b7f682eef54aaf0a59c50eeacdb11463b43b124a044caf496cde59936ac05c8"},
 ]
 
 [package.dependencies]
@@ -794,7 +767,6 @@ requests = "*"
 name = "markdown"
 version = "3.3.7"
 description = "Python implementation of Markdown."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -812,7 +784,6 @@ testing = ["coverage", "pyyaml"]
 name = "markupsafe"
 version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -872,7 +843,6 @@ files = [
 name = "mergedeep"
 version = "1.3.4"
 description = "A deep merge function for 🐍."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -884,7 +854,6 @@ files = [
 name = "mike"
 version = "1.2.0.dev0"
 description = "Manage multiple versions of your MkDocs-powered documentation"
-category = "dev"
 optional = false
 python-versions = "*"
 files = []
@@ -910,38 +879,56 @@ resolved_reference = "be1aafe244bc86172fbce52a903c9ab83e2e4a26"
 
 [[package]]
 name = "mkdocs"
-version = "1.4.2"
+version = "1.6.1"
 description = "Project documentation with Markdown."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "mkdocs-1.4.2-py3-none-any.whl", hash = "sha256:c8856a832c1e56702577023cd64cc5f84948280c1c0fcc6af4cd39006ea6aa8c"},
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 [package.dependencies]
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 colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""}
 ghp-import = ">=1.0"
-importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 jinja2 = ">=2.11.1"
-markdown = ">=3.2.1,<3.4"
+markdown = ">=3.3.6"
+markupsafe = ">=2.0.1"
 mergedeep = ">=1.3.4"
+mkdocs-get-deps = ">=0.2.0"
 packaging = ">=20.5"
+pathspec = ">=0.11.1"
 pyyaml = ">=5.1"
 pyyaml-env-tag = ">=0.1"
 watchdog = ">=2.0"
 
 [package.extras]
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+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
+
+[[package]]
+name = "mkdocs-get-deps"
+version = "0.2.0"
+description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+mergedeep = ">=1.3.4"
+platformdirs = ">=2.2.0"
+pyyaml = ">=5.1"
 
 [[package]]
 name = "mkdocs-material"
 version = "8.5.11"
 description = "Documentation that simply works"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -962,7 +949,6 @@ requests = ">=2.26"
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 version = "1.1.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -974,7 +960,6 @@ files = [
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 version = "0.6.0"
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-category = "dev"
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 python-versions = ">=3.5"
 files = [
@@ -996,7 +981,6 @@ setuptools = ">=18.5"
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 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-category = "dev"
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 python-versions = ">=3.6"
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@@ -1011,7 +995,6 @@ et-xmlfile = "*"
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 description = "Core utilities for Python packages"
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 python-versions = ">=3.7"
 files = [
@@ -1023,11 +1006,9 @@ files = [
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-category = "dev"
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 python-versions = "*"
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@@ -1035,7 +1016,6 @@ files = [
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 python-versions = ">=3.7"
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@@ -1043,11 +1023,26 @@ files = [
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 ]
 
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+name = "platformdirs"
+version = "4.3.6"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
+optional = false
+python-versions = ">=3.8"
+files = [
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+
+[package.extras]
+docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)"]
+type = ["mypy (>=1.11.2)"]
+
 [[package]]
 name = "pluggy"
 version = "1.0.0"
 description = "plugin and hook calling mechanisms for python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1063,7 +1058,6 @@ testing = ["pytest", "pytest-benchmark"]
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 version = "3.11"
 description = "Python Lex & Yacc"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1075,7 +1069,6 @@ files = [
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 description = "A python API for working with ID prefixes"
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 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -1091,78 +1084,147 @@ requests = ">=2.28.1,<3.0.0"
 
 [[package]]
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-category = "main"
 optional = false
-python-versions = ">=3.7.6,<4.0.0"
+python-versions = "<4.0,>=3.8"
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 ]
 
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 pyyaml = ">=5.3.1"
 
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-category = "main"
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+description = "Data validation using Python type hints"
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-email = ["email-validator (>=1.0.3)"]
+email = ["email-validator (>=2.0.0)"]
+timezone = ["tzdata"]
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 python-versions = ">=3.7,<4.0"
 files = [
@@ -1458,7 +1507,6 @@ networkx = ["networkx (>=2.0.0,<3.0.0)"]
 name = "rdflib-jsonld"
 version = "0.6.1"
 description = "rdflib extension adding JSON-LD parser and serializer"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1473,7 +1521,6 @@ rdflib = ">=5.0.0"
 name = "rdflib-shim"
 version = "1.0.3"
 description = "Shim for rdflib 5 and 6 incompatibilities"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1489,7 +1536,6 @@ rdflib-jsonld = "0.6.1"
 name = "requests"
 version = "2.28.2"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=3.7, <4"
 files = [
@@ -1511,7 +1557,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "rfc3339-validator"
 version = "0.1.4"
 description = "A pure python RFC3339 validator"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1526,7 +1571,6 @@ six = "*"
 name = "rfc3987"
 version = "1.3.8"
 description = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1538,7 +1582,6 @@ files = [
 name = "ruamel-yaml"
 version = "0.17.21"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
-category = "dev"
 optional = false
 python-versions = ">=3"
 files = [
@@ -1557,7 +1600,6 @@ jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 name = "ruamel-yaml-clib"
 version = "0.2.7"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1568,8 +1610,7 @@ files = [
     {file = "ruamel.yaml.clib-0.2.7-cp310-cp310-win32.whl", hash = "sha256:763d65baa3b952479c4e972669f679fe490eee058d5aa85da483ebae2009d231"},
     {file = "ruamel.yaml.clib-0.2.7-cp310-cp310-win_amd64.whl", hash = "sha256:d000f258cf42fec2b1bbf2863c61d7b8918d31ffee905da62dede869254d3b8a"},
     {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:045e0626baf1c52e5527bd5db361bc83180faaba2ff586e763d3d5982a876a9e"},
-    {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-macosx_13_0_arm64.whl", hash = "sha256:1a6391a7cabb7641c32517539ca42cf84b87b667bad38b78d4d42dd23e957c81"},
-    {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-manylinux2014_aarch64.whl", hash = "sha256:9c7617df90c1365638916b98cdd9be833d31d337dbcd722485597b43c4a215bf"},
+    {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-macosx_12_6_arm64.whl", hash = "sha256:721bc4ba4525f53f6a611ec0967bdcee61b31df5a56801281027a3a6d1c2daf5"},
     {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl", hash = "sha256:41d0f1fa4c6830176eef5b276af04c89320ea616655d01327d5ce65e50575c94"},
     {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-win32.whl", hash = "sha256:f6d3d39611ac2e4f62c3128a9eed45f19a6608670c5a2f4f07f24e8de3441d38"},
     {file = "ruamel.yaml.clib-0.2.7-cp311-cp311-win_amd64.whl", hash = "sha256:da538167284de58a52109a9b89b8f6a53ff8437dd6dc26d33b57bf6699153122"},
@@ -1604,7 +1645,6 @@ files = [
 name = "setuptools"
 version = "67.6.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1621,7 +1661,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (
 name = "shexjsg"
 version = "0.8.2"
 description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1636,7 +1675,6 @@ pyjsg = ">=0.11.10"
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1648,7 +1686,6 @@ files = [
 name = "sortedcontainers"
 version = "2.4.0"
 description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1660,7 +1697,6 @@ files = [
 name = "soupsieve"
 version = "2.4"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1672,7 +1708,6 @@ files = [
 name = "sparqlslurper"
 version = "0.5.1"
 description = "SPARQL Slurper for rdflib"
-category = "dev"
 optional = false
 python-versions = ">=3.7.4"
 files = [
@@ -1689,7 +1724,6 @@ sparqlwrapper = ">=1.8.2"
 name = "sparqlwrapper"
 version = "2.0.0"
 description = "SPARQL Endpoint interface to Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1710,7 +1744,6 @@ pandas = ["pandas (>=1.3.5)"]
 name = "sqlalchemy"
 version = "2.0.7"
 description = "Database Abstraction Library"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1788,7 +1821,6 @@ sqlcipher = ["sqlcipher3-binary"]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1798,21 +1830,19 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.5.0"
-description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "main"
+version = "4.12.2"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"},
-    {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"},
+    {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+    {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
 ]
 
 [[package]]
 name = "uri-template"
 version = "1.2.0"
 description = "RFC 6570 URI Template Processor"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1827,7 +1857,6 @@ dev = ["flake8 (<4.0.0)", "flake8-annotations", "flake8-bugbear", "flake8-commas
 name = "urllib3"
 version = "1.26.15"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -1844,7 +1873,6 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 name = "verspec"
 version = "0.1.0"
 description = "Flexible version handling"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1859,7 +1887,6 @@ test = ["coverage", "flake8 (>=3.7)", "mypy", "pretend", "pytest"]
 name = "watchdog"
 version = "3.0.0"
 description = "Filesystem events monitoring"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1899,7 +1926,6 @@ watchmedo = ["PyYAML (>=3.10)"]
 name = "webcolors"
 version = "1.13"
 description = "A library for working with the color formats defined by HTML and CSS."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1915,7 +1941,6 @@ tests = ["pytest", "pytest-cov"]
 name = "wrapt"
 version = "1.15.0"
 description = "Module for decorators, wrappers and monkey patching."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -2000,7 +2025,6 @@ files = [
 name = "yamllint"
 version = "1.32.0"
 description = "A linter for YAML files."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2019,7 +2043,6 @@ dev = ["doc8", "flake8", "flake8-import-order", "rstcheck[sphinx]", "sphinx"]
 name = "zipp"
 version = "3.15.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [