From 191cedb1211ab0ad17d07a33dfb00cb5ab5698b6 Mon Sep 17 00:00:00 2001
From: degleris1 <degleris1@gmail.com>
Date: Fri, 28 Jul 2023 15:16:30 -0700
Subject: [PATCH] Added environment for neuroscience experiments

---
 ppseq/Manifest.toml | 844 ++++++++++++++++++++++++++++++++++++++++++++
 ppseq/Project.toml  |  16 +
 setup.jl            |  10 +-
 3 files changed, 867 insertions(+), 3 deletions(-)
 create mode 100644 ppseq/Manifest.toml
 create mode 100644 ppseq/Project.toml

diff --git a/ppseq/Manifest.toml b/ppseq/Manifest.toml
new file mode 100644
index 0000000..c5be08c
--- /dev/null
+++ b/ppseq/Manifest.toml
@@ -0,0 +1,844 @@
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+
+[[deps.Random]]
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+[[deps.RecipesBase]]
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+[[deps.Reexport]]
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+[[deps.Rmath_jll]]
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+
+[[deps.SortingAlgorithms]]
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+[[deps.SparseArrays]]
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+[[deps.SpecialFunctions]]
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+pinned = true
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+
+    [deps.SpecialFunctions.extensions]
+    SpecialFunctionsChainRulesCoreExt = "ChainRulesCore"
+
+    [deps.SpecialFunctions.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+
+[[deps.StaticArrays]]
+deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
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+weakdeps = ["Statistics"]
+
+    [deps.StaticArrays.extensions]
+    StaticArraysStatisticsExt = "Statistics"
+
+[[deps.StaticArraysCore]]
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+
+    [deps.StatsFuns.extensions]
+    StatsFunsChainRulesCoreExt = "ChainRulesCore"
+    StatsFunsInverseFunctionsExt = "InverseFunctions"
+
+    [deps.StatsFuns.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
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+
+[[deps.StringEncodings]]
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+[[deps.YAML]]
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+[[deps.libaec_jll]]
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+[[deps.libblastrampoline_jll]]
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+
+[[deps.nghttp2_jll]]
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+pinned = true
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
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+
+[[deps.p7zip_jll]]
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diff --git a/ppseq/Project.toml b/ppseq/Project.toml
new file mode 100644
index 0000000..2e362c1
--- /dev/null
+++ b/ppseq/Project.toml
@@ -0,0 +1,16 @@
+[deps]
+BSON = "fbb218c0-5317-5bc6-957e-2ee96dd4b1f0"
+CMF = "d7b4f7bb-dfb9-55a0-b772-730f63cc23a0"
+Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
+Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
+Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
+Hungarian = "e91730f6-4275-51fb-a7a0-7064cfbd3b39"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+MAT = "23992714-dd62-5051-b70f-ba57cb901cac"
+Peaks = "18e31ff7-3703-566c-8e60-38913d67486b"
+PointProcessSequences = "d68ed3fc-988c-453b-86e7-a6411c80bd32"
+Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
diff --git a/setup.jl b/setup.jl
index 380fde8..cfca56a 100644
--- a/setup.jl
+++ b/setup.jl
@@ -4,10 +4,14 @@ using Pkg
 Pkg.activate(@__DIR__)
 Pkg.instantiate()
 
-# Install experiment environments
+# Install synthetic experiment environments
 Pkg.activate(joinpath(@__DIR__, "experiments", "dpm_limit"))
 Pkg.instantiate()
 
-# Install experiment environments
+# Install embassy experiment environments
 Pkg.activate(joinpath(@__DIR__, "experiments", "embassy"))
-Pkg.instantiate()
\ No newline at end of file
+Pkg.instantiate()
+
+# Install neural experiment environments
+Pkg.activate(joinpath(@__DIR__, "ppseq"))
+Pkg.instantiate()