21_merge_data_dl.yml

target_default: 21_merge_data_dl

include:
  - 20_merge_data.yml

packages:
  - dplyr
  - tidyr
  - readr
  - dataRetrieval
  - openxlsx
  
sources:
  - 20_merge_data/src/merge_data.R
  
targets:
  21_merge_data_dl:
    depends: 
      - data/pesticides_dl.xlsx
      - data/pesticides_Conc_dl.xlsx
      - data/pesticides_Bench_dl.xlsx
      - chemicalSummary_dl
      - chemicalSummary_bench_dl
      - chemicalSummary_conc_dl
    
  chem_info_dl:
    command: create_tox_chemInfo(chem_data_dl, special_cas, pCodeInfo, classes_fixed)
    
  data/pesticides_dl.xlsx:
    command: create_toxExcel(chem_data_dl, chem_info_dl, site_info, exclusions, target_name)
    
  data/pesticides_Conc_dl.xlsx:
    command: create_ConcExcel(chem_data_dl, chem_info_dl, site_info, exclusions, target_name)
    
  data/pesticides_Bench_dl.xlsx:
    command: create_WQExcel(chem_data_dl, chem_info_dl, site_info, exclusions, benchmarks, target_name)

  chemicalSummary_dl:
    command: get_chem_sum("data/pesticides_dl.xlsx")

  chemicalSummary_bench_dl:
    command: get_chem_bench("data/pesticides_Bench_dl.xlsx")

  chemicalSummary_conc_dl:
    command: get_conc_summary("data/pesticides_Conc_dl.xlsx")