From 2aa0bfe0362aaff03d7aad5f2d5d66bb4c7f85ef Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 8 Apr 2024 21:02:30 +0000
Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 cirrocumulus/concat.py         |  8 +++++---
 cirrocumulus/diff_exp.py       | 16 ++++++++++------
 cirrocumulus/local_db_api.py   |  6 ++++--
 src/AutocompleteVirtualized.js |  4 ++--
 src/actions/index.js           |  4 ++--
 src/util.js                    | 24 ++++++++++++------------
 6 files changed, 35 insertions(+), 27 deletions(-)

diff --git a/cirrocumulus/concat.py b/cirrocumulus/concat.py
index 5ef32512..d90e958c 100644
--- a/cirrocumulus/concat.py
+++ b/cirrocumulus/concat.py
@@ -148,9 +148,11 @@ def concat_spatial(paths: list[str], output_path: str, ncols: int = 2):
 
 def create_parser(description=False):
     parser = argparse.ArgumentParser(
-        description="Concatenate datasets in a grid layout. If all the datasets are spatial datasets, then tissue images are concatenated."
-        if description
-        else None
+        description=(
+            "Concatenate datasets in a grid layout. If all the datasets are spatial datasets, then tissue images are concatenated."
+            if description
+            else None
+        )
     )
     parser.add_argument(
         "dataset",
diff --git a/cirrocumulus/diff_exp.py b/cirrocumulus/diff_exp.py
index 4b4fc09f..a25da862 100644
--- a/cirrocumulus/diff_exp.py
+++ b/cirrocumulus/diff_exp.py
@@ -137,11 +137,15 @@ def __init__(
                 scores=scores,
                 pvals=pvals,
                 logfoldchanges=foldchanges,
-                frac_expressed1=frac_expressed_df.loc[group_one].values
-                if frac_expressed_df is not None
-                else None,
-                frac_expressed2=frac_expressed_df.loc[group_two].values
-                if frac_expressed_df is not None
-                else None,
+                frac_expressed1=(
+                    frac_expressed_df.loc[group_one].values
+                    if frac_expressed_df is not None
+                    else None
+                ),
+                frac_expressed2=(
+                    frac_expressed_df.loc[group_two].values
+                    if frac_expressed_df is not None
+                    else None
+                ),
             )
         self.pair2results = pair2results
diff --git a/cirrocumulus/local_db_api.py b/cirrocumulus/local_db_api.py
index 79bfaacb..2f6b0bbc 100644
--- a/cirrocumulus/local_db_api.py
+++ b/cirrocumulus/local_db_api.py
@@ -50,8 +50,10 @@ def __init__(self, paths: list[str]):
                 if url.lower().endswith(".json.gz") or url.lower().endswith(".json"):
                     import gzip
 
-                    with gzip.open(fs.open(url)) if url.lower().endswith(".json.gz") else fs.open(
-                        url
+                    with (
+                        gzip.open(fs.open(url))
+                        if url.lower().endswith(".json.gz")
+                        else fs.open(url)
                     ) as f:
                         d = json.load(f)
                         if "id" in d:
diff --git a/src/AutocompleteVirtualized.js b/src/AutocompleteVirtualized.js
index b64b5075..bb8e0dff 100644
--- a/src/AutocompleteVirtualized.js
+++ b/src/AutocompleteVirtualized.js
@@ -262,8 +262,8 @@ export default function AutocompleteVirtualized(props) {
           result.text != null
             ? result.text
             : result.id != null
-            ? result.id
-            : result;
+              ? result.id
+              : result;
         textToOption.delete(text.toLowerCase());
       });
       tokens.forEach((token) => {
diff --git a/src/actions/index.js b/src/actions/index.js
index 70b3b76e..59bf4ef2 100644
--- a/src/actions/index.js
+++ b/src/actions/index.js
@@ -2425,8 +2425,8 @@ function getNewEmbeddingData(state, features) {
       embedding.spatial != null
         ? embedding.spatial.type
         : embedding.type
-        ? embedding.type
-        : TRACE_TYPE_SCATTER;
+          ? embedding.type
+          : TRACE_TYPE_SCATTER;
     let coordinates =
       traceType !== TRACE_TYPE_META_IMAGE ? cachedData[embeddingKey] : null;
     if (coordinates == null && embedding.mode != null) {
diff --git a/src/util.js b/src/util.js
index 04e20d8c..029b5b0a 100644
--- a/src/util.js
+++ b/src/util.js
@@ -680,10 +680,10 @@ export function rankdata(values) {
     return a.value < b.value
       ? -1
       : a.value === b.value
-      ? a.position < b.position
-        ? -1
-        : 1
-      : 1;
+        ? a.position < b.position
+          ? -1
+          : 1
+        : 1;
   });
 
   // Walk the sorted array, filling output array using sorted positions,
@@ -722,20 +722,20 @@ function indexSortPairs(ranks, ascending) {
       return a.value < b.value
         ? -1
         : a.value === b.value
-        ? a.position < b.position
-          ? -1
-          : 1
-        : 1;
+          ? a.position < b.position
+            ? -1
+            : 1
+          : 1;
     });
   } else {
     ranks.sort(function (a, b) {
       return a.value < b.value
         ? 1
         : a.value === b.value
-        ? a.position < b.position
-          ? 1
-          : -1
-        : -1;
+          ? a.position < b.position
+            ? 1
+            : -1
+          : -1;
     });
   }