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Include BIDS writer into SPM interface #11

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mrikasper opened this issue Aug 8, 2022 · 1 comment
Open
Tracked by #1

Include BIDS writer into SPM interface #11

mrikasper opened this issue Aug 8, 2022 · 1 comment

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@mrikasper
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Update tapas_physio_cfg_matlabbatch with new BIDS-writer-related parameters

  • BIDS filename,
  • selected derivative (preproc step) to be saved
@mrikasper
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Idea:

  1. Create a top-level (like save_dir) parameter of physio named bids_out_prefix with a BIDS-compatible default, e.g., sub-01_ses-01...
  2. Add this as a cfg_entry with string input to tapas_physio_cfg_matlabbatch, e.g., similar to output_physio, e.g.,
    output_bids_prefix = cfg_entry;
  3. Add this output_bids_prefix to the final assembly of the physio menu: physio.val = {save_dir output_bids_prefix files scan_timing preproc model verbose};

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