requirements.txt

anndata==0.10.3
anndata2ri==1.3.1
annoy==1.17.3
array-api-compat==1.4
asttokens==2.4.1
bio==1.6.2
biopython==1.83
biothings-client==0.3.1
certifi==2024.2.2
cffi==1.16.0
charset-normalizer==3.3.2
clarabel==0.7.0
colorama==0.4.6
comm==0.1.4
contourpy==1.2.0
cvxpy==1.4.2
cycler==0.12.1
cython==3.0.7
debugpy==1.6.7
decorator==4.4.2
ecos==2.0.13
exceptiongroup==1.2.0
executing==2.0.1
fonttools==4.46.0
gglasso==0.1.10
gprofiler-official==1.0.0
h5py==3.10.0
idna==3.6
igraph==0.10.8
imageio==2.33.1
importlib-metadata==7.0.0
importlib_metadata==7.0.0
ipykernel==6.26.0
ipython==8.18.1
jedi==0.19.1
jinja2==3.1.3
joblib==1.3.2
jupyter_client==8.6.0
kiwisolver==1.4.5
latentcor==0.2.5
lazy-loader==0.3
leidenalg==0.10.2
llvmlite==0.41.1
louvain==0.8.1
markupsafe==2.1.5
matplotlib==3.8.2
matplotlib-inline==0.1.6
mudata==0.2.3
mygene==3.2.2
natsort==8.4.0
nest-asyncio==1.5.8
networkx==3.2.1
numba==0.58.1
numpy==1.26.2
osqp==0.6.5
packaging==23.2
pandas==2.1.4
parso==0.8.3
patsy==0.5.4
pickleshare==0.7.5
pillow==10.1.0
pip==23.3.1
platformdirs==4.1.0
pooch==1.8.1
prompt-toolkit==3.0.42
psutil==5.9.0
pure_eval==0.2.2
pybind11==2.11.1
pycparser==2.21
pygments==2.17.2
pynndescent==0.5.11
pyparsing==3.1.1
python-dateutil==2.8.2
pyzmq==25.1.0
qdldl==0.1.7.post0
regain==0.3.9
requests==2.31.0
scanpy==1.9.6
scikit-image==0.22.0
scikit-learn==1.3.2
scikit-misc==0.3.1
scipy==1.11.4
scranpy==0.1
scrublet==0.2.3
scs==3.2.4.post1
seaborn==0.12.2
session-info==1.0.0
setuptools==68.2.2
six==1.16.0
stack_data==0.6.2
statsmodels==0.14.0
stdlib-list==0.10.0
texttable==1.7.0
threadpoolctl==3.2.0
tifffile==2023.12.9
tornado==6.3.3
tqdm==4.66.1
traitlets==5.14.0
typing_extensions==4.9.0
tzdata==2023.3
tzlocal==5.2
umap-learn==0.5.5
urllib3==2.2.1
wheel==0.42.0
zipp==3.17.0