From 57acff529b7b056adbffa2a304ce986751765efc Mon Sep 17 00:00:00 2001 From: Matthew Menold Date: Fri, 24 Jan 2025 13:09:28 -0500 Subject: [PATCH 1/2] cast genome count to string --- wrappers/wrappers/macs2/callpeak/wrapper.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wrappers/wrappers/macs2/callpeak/wrapper.py b/wrappers/wrappers/macs2/callpeak/wrapper.py index d90c17d64..8c64f2efd 100644 --- a/wrappers/wrappers/macs2/callpeak/wrapper.py +++ b/wrappers/wrappers/macs2/callpeak/wrapper.py @@ -15,7 +15,7 @@ genome_count_flag = '' if effective_genome_count != '': - genome_count_flag = ' -g ' + effective_genome_count + ' ' + genome_count_flag = ' -g ' + str(effective_genome_count) + ' ' cmds = ( 'macs2 ' From e6acb32112e403704ae1b6ac66c669f62570a9af Mon Sep 17 00:00:00 2001 From: menoldmt <129203894+menoldmt@users.noreply.github.com> Date: Fri, 24 Jan 2025 13:18:36 -0500 Subject: [PATCH 2/2] Remove extra spaces in wrapper.py One extra space still persists after the genome_count value in the macs2 command. Unsure how to remove it. It does not produce an error --- wrappers/wrappers/macs2/callpeak/wrapper.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wrappers/wrappers/macs2/callpeak/wrapper.py b/wrappers/wrappers/macs2/callpeak/wrapper.py index 8c64f2efd..1a6b7b0d4 100644 --- a/wrappers/wrappers/macs2/callpeak/wrapper.py +++ b/wrappers/wrappers/macs2/callpeak/wrapper.py @@ -15,7 +15,7 @@ genome_count_flag = '' if effective_genome_count != '': - genome_count_flag = ' -g ' + str(effective_genome_count) + ' ' + genome_count_flag = '-g ' + str(effective_genome_count) cmds = ( 'macs2 '