Added hyperlink to rnaseq.Rmd 'found duplicate names' error message that leads to docs. Closes issue #395

Matthew Menold · Matthew Menold · commit 326bb8464eb7 · 2023-11-28T16:13:31.000-05:00
diff --git a/lib/lcdbwf/R/helpers.R b/lib/lcdbwf/R/helpers.R
@@ -81,7 +81,7 @@ collect_objects <- function(pattern, fixed=FALSE){
   # If there was a wildcard in the pattern there is a risk that the modified
   # names are no longer unique
   if (length(unique(modified_names)) != length(var_names)){
-    stop(paste("Found duplicate names after removing pattern", pattern))
+    stop(paste("Found duplicate names after removing pattern", pattern, "see https://lcdb.github.io/lcdb-wf/rnaseq-rmd.html#Errors for details"))
   }
   names(obj_list) <- modified_names
   return(obj_list)

Original file line number	Diff line number	Diff line change
`@@ -81,7 +81,7 @@ collect_objects <- function(pattern, fixed=FALSE){`
`81`	`81`	`# If there was a wildcard in the pattern there is a risk that the modified`
`82`	`82`	`# names are no longer unique`
`83`	`83`	`if (length(unique(modified_names)) != length(var_names)){`
`84`		`- stop(paste("Found duplicate names after removing pattern", pattern))`
	`84`	`+ stop(paste("Found duplicate names after removing pattern", pattern, "see https://lcdb.github.io/lcdb-wf/rnaseq-rmd.html#Errors for details"))`
`85`	`85`	`}`
`86`	`86`	`names(obj_list) <- modified_names`
`87`	`87`	`return(obj_list)`