From 0daa93d7d3a58adec475c62ebe0fbc36b0772f58 Mon Sep 17 00:00:00 2001 From: doncheva Date: Sun, 29 Sep 2024 22:50:02 +0200 Subject: [PATCH] Changed instructions in stringApp disease exercise --- _pages/training_stringapp_diseases.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_pages/training_stringapp_diseases.md b/_pages/training_stringapp_diseases.md index e36a90d..078f26e 100644 --- a/_pages/training_stringapp_diseases.md +++ b/_pages/training_stringapp_diseases.md @@ -94,7 +94,7 @@ _How many big clusters are there (with more than 10 nodes)? Are any of the clust ### 2.2 Group-wise functional enrichment -Now we will perform functional enrichment analysis on each of the bigger clusters separately. Sometimes stringApp does not detect the clustered network as STRING network, so switch to the unclustered network and back to the clustered one. Now, select the menu **Apps → STRING Enrichment → Retrieve group-wise functional enrichment**. In the resulting dialog, press **Advanced** to show the advanced options and set the **minimum group size** to **10**, in order to retrieve enrichment results only for clusters with at least 10 nodes. Press **OK** and the **STRING enrichment** table will be populated with several tables, one for each cluster. You can explore the results of each of them separately. Note that if you only see enriched DISEASES, you need to reset the filter by pressing the filter icon, choosing **Select all** for including all categories, and pressing **OK**. +Now we will perform functional enrichment analysis on each of the bigger clusters separately. Sometimes stringApp does not detect the clustered network as STRING network, so switch to the unclustered network and back to the clustered one. Now, select the menu **Apps → STRING Enrichment → Retrieve group-wise functional enrichment**. In the resulting dialog, press **Advanced** to show the advanced options and set the **minimum group size** to **10**, in order to retrieve enrichment results only for clusters with at least 10 nodes. Press **OK** and the **STRING enrichment** table will be populated with several tables, one for each cluster (look at the bottom right, next to the *Node* and *Edge Table*). You can explore the results of each of them separately. Note that if you only see enriched DISEASES, you need to reset the filter by pressing the filter icon, choosing **Select all** for including all categories, and pressing **OK**. _Can you briefly characterize the three largest clusters in terms of their functionality? What distinguishes them?_