From 8ee17845375ea86b7b8f87b92cb5850bced358fc Mon Sep 17 00:00:00 2001 From: Alex Wolf Date: Thu, 19 Sep 2024 00:30:43 +0200 Subject: [PATCH] =?UTF-8?q?=F0=9F=94=96=20Release=20lamindb=200.76.7=20(#1?= =?UTF-8?q?47)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * 🔖 Release lamindb 0.76.7 * 💚 Fix --- docs/changelog/2024.md | 35 +++++++++++++++++++++++++++++++++ docs/changelog/soon/bionty.md | 9 --------- docs/changelog/soon/lamindb.md | 24 ---------------------- docs/changelog/soon/usecases.md | 10 ---------- 4 files changed, 35 insertions(+), 43 deletions(-) diff --git a/docs/changelog/2024.md b/docs/changelog/2024.md index b34c82ce..f8806852 100644 --- a/docs/changelog/2024.md +++ b/docs/changelog/2024.md @@ -14,6 +14,41 @@ .. role:: small ``` +## 2024-09-18 {small}`db 0.76.7 | bionty 0.50.2` + +- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamindb/pull/1944) [@falexwolf](https://github.com/falexwolf) +- ✨ Enable displaying images via `artifact.load()`, add documentation for artifact loaders [PR](https://github.com/laminlabs/lamindb/pull/1938) [@falexwolf](https://github.com/falexwolf) +- 🚸 Do not throw an error but prompt upon `ln.context.track()` in a notebook [PR](https://github.com/laminlabs/lamindb/pull/1925) [@falexwolf](https://github.com/falexwolf) +- 🚸 Allow to use `Collection.mapped()` without saving the collection [PR](https://github.com/laminlabs/lamindb/pull/1942) [@Koncopd](https://github.com/Koncopd) +- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamindb/pull/1945) [@falexwolf](https://github.com/falexwolf) +- 🚸 Add parameter validation in bionty [PR](https://github.com/laminlabs/bionty/pull/111) [@Zethson](https://github.com/Zethson) + +:::{dropdown} Technical changes + +- 🔊 More logging for `import_from_source` [PR](https://github.com/laminlabs/lamindb/pull/1934) [@sunnyosun](https://github.com/sunnyosun) +- 🔊 Warn instead of hint about missed input tracking [PR](https://github.com/laminlabs/lamindb/pull/1933) [@Koncopd](https://github.com/Koncopd) +- ✨ Add `n_observations` to `tiledbsoma`-like artifacts [PR](https://github.com/laminlabs/lamindb/pull/1930) [@Koncopd](https://github.com/Koncopd) +- 🎨 Remove `stream` argument from `artifact.load()` [PR](https://github.com/laminlabs/lamindb/pull/1941) [@Koncopd](https://github.com/Koncopd) + +::: + +:::{dropdown} Ontology versions + +- 🍱 New Tissue version: uberon-2024-03-22 [PR](https://github.com/laminlabs/bionty/pull/118) [@Zethson](https://github.com/Zethson) +- 🍱 New Disease version: mondo-2024-05-08 [PR](https://github.com/laminlabs/bionty/pull/115) [@Zethson](https://github.com/Zethson) +- 🍱 New ExperimentalFactor version: efo-3.65.0 [PR](https://github.com/laminlabs/bionty/pull/113) [@Zethson](https://github.com/Zethson) +- 🍱 New CellType version: cl-2024-04-05 [PR](https://github.com/laminlabs/bionty/pull/112) [@Zethson](https://github.com/Zethson) + +::: + +:::{dropdown} Use case changes + +- ✨ Add support for cellxgene-schema 5.1.0 [PR](https://github.com/laminlabs/cellxgene-lamin/pull/97) [@Zethson](https://github.com/Zethson) +- 📝 Integrate cellxgene guides and add data loader examples [PR](https://github.com/laminlabs/cellxgene-lamin/pull/100) [@Koncopd](https://github.com/Koncopd) +- 📝 Track all AnnData inputs in `scrna-tiledbsoma` [PR](https://github.com/laminlabs/lamin-usecases/pull/153) [@Koncopd](https://github.com/Koncopd) + +::: + ## 2024-09-09 {small}`db 0.76.6 | bionty 0.50` - ✨ Enable negations in `filter()` [PR](https://github.com/laminlabs/lamindb/pull/1913) [@falexwolf](https://github.com/falexwolf) diff --git a/docs/changelog/soon/bionty.md b/docs/changelog/soon/bionty.md index 35437761..e69de29b 100644 --- a/docs/changelog/soon/bionty.md +++ b/docs/changelog/soon/bionty.md @@ -1,9 +0,0 @@ -- :speaker: Consistent handling of yes/no logging [PR](https://github.com/laminlabs/bionty/pull/114) [@falexwolf](https://github.com/falexwolf) -- 🍱 New Tissue version: uberon-2024-03-22 [PR](https://github.com/laminlabs/bionty/pull/118) [@Zethson](https://github.com/Zethson) -- 🔊 More logging for `import_from_source` [PR](https://github.com/laminlabs/bionty/pull/117) [@sunnyosun](https://github.com/sunnyosun) -- 🍱 New Disease version: mondo-2024-05-08 [PR](https://github.com/laminlabs/bionty/pull/115) [@Zethson](https://github.com/Zethson) -- 🍱 New ExperimentalFactor version: efo-3.65.0 [PR](https://github.com/laminlabs/bionty/pull/113) [@Zethson](https://github.com/Zethson) -- 🍱 New CellType version: cl-2024-04-05 [PR](https://github.com/laminlabs/bionty/pull/112) [@Zethson](https://github.com/Zethson) -- :sparkles: Add parameter validation [PR](https://github.com/laminlabs/bionty/pull/111) [@Zethson](https://github.com/Zethson) -- 📝 Add explicit sphinx headers [PR](https://github.com/laminlabs/bionty/pull/110) [@Zethson](https://github.com/Zethson) -- 🐛 Fix parents update [PR](https://github.com/laminlabs/bionty/pull/107) [@sunnyosun](https://github.com/sunnyosun) diff --git a/docs/changelog/soon/lamindb.md b/docs/changelog/soon/lamindb.md index 561f2edf..e69de29b 100644 --- a/docs/changelog/soon/lamindb.md +++ b/docs/changelog/soon/lamindb.md @@ -1,24 +0,0 @@ -- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamindb/pull/1945) [@falexwolf](https://github.com/falexwolf) -- 🚸 Simplify CLI commands [PR](https://github.com/laminlabs/lamin-cli/pull/72) [@falexwolf](https://github.com/falexwolf) -- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamindb/pull/1944) [@falexwolf](https://github.com/falexwolf) -- ✨ Enable getting the latest run environment for a transform [PR](https://github.com/laminlabs/lamin-cli/pull/71) [@falexwolf](https://github.com/falexwolf) -- 🚸 Do not throw an error but prompt upon `ln.context.track()` in a notebook [PR](https://github.com/laminlabs/lamindb/pull/1925) [@falexwolf](https://github.com/falexwolf) -- ⚡️ Cleanup on error in Artifact.load [PR](https://github.com/laminlabs/lamindb/pull/1943) [@Koncopd](https://github.com/Koncopd) -- ✨ Allow to use Collection.mapped without saving [PR](https://github.com/laminlabs/lamindb/pull/1942) [@Koncopd](https://github.com/Koncopd) -- 🎨 Remove `stream` argument from `artifact.load()` [PR](https://github.com/laminlabs/lamindb/pull/1941) [@Koncopd](https://github.com/Koncopd) -- ✨ Enable displaying images, document artifact loaders [PR](https://github.com/laminlabs/lamindb/pull/1938) [@falexwolf](https://github.com/falexwolf) -- 🎨 No longer populate `storage_id` in instance table during `init` [PR](https://github.com/laminlabs/lamindb-setup/pull/856) [@falexwolf](https://github.com/falexwolf) -- 🔊 More logging for import_from_source [PR](https://github.com/laminlabs/lamindb/pull/1934) [@sunnyosun](https://github.com/sunnyosun) -- 🔊 Warning instead of hint in _track_run_input [PR](https://github.com/laminlabs/lamindb/pull/1933) [@Koncopd](https://github.com/Koncopd) -- 🎨 Speed up feature add_from [PR](https://github.com/laminlabs/lamindb/pull/1931) [@sunnyosun](https://github.com/sunnyosun) -- ✨ Add n_observations to tiledbsoma artifacts [PR](https://github.com/laminlabs/lamindb/pull/1930) [@Koncopd](https://github.com/Koncopd) -- ✅ Test re-login in CLI [PR](https://github.com/laminlabs/lamindb/pull/1929) [@Koncopd](https://github.com/Koncopd) -- ✅ Test re-login [PR](https://github.com/laminlabs/lamin-cli/pull/70) [@Koncopd](https://github.com/Koncopd) -- 🐛 Proper re-login if api_key is present in env files [PR](https://github.com/laminlabs/lamindb-setup/pull/853) [@Koncopd](https://github.com/Koncopd) -- ✨ Add UX issue template [PR](https://github.com/laminlabs/lamindb/pull/1928) [@Zethson](https://github.com/Zethson) -- ✨ Improve curation save terms msg [PR](https://github.com/laminlabs/lamindb/pull/1926) [@Zethson](https://github.com/Zethson) -- 🎨 Fix issue templates labels [PR](https://github.com/laminlabs/lamindb/pull/1927) [@Zethson](https://github.com/Zethson) -- 🔧 Use LAMINDB_DJANGO_DATABASE_URL instead of DATABASE_URL [PR](https://github.com/laminlabs/lamindb-setup/pull/852) [@Koncopd](https://github.com/Koncopd) -- ✅ Use connect_instance_new for Koncopd, sunnyosun and falexwolf for local testing [PR](https://github.com/laminlabs/lamindb-setup/pull/851) [@Koncopd](https://github.com/Koncopd) -- ✅ Test connect_instance_new for anonymous [PR](https://github.com/laminlabs/lamindb-setup/pull/850) [@Koncopd](https://github.com/Koncopd) -- 🐛 Fix parents update [PR](https://github.com/laminlabs/lamindb/pull/1917) [@sunnyosun](https://github.com/sunnyosun) diff --git a/docs/changelog/soon/usecases.md b/docs/changelog/soon/usecases.md index 350b40b7..e69de29b 100644 --- a/docs/changelog/soon/usecases.md +++ b/docs/changelog/soon/usecases.md @@ -1,10 +0,0 @@ -- 📝 Add data loader examples to cellxgene guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/100) [@Koncopd](https://github.com/Koncopd) -- ✨ Use uv tool for cellxgene-schema [PR](https://github.com/laminlabs/cellxgene-lamin/pull/99) [@Zethson](https://github.com/Zethson) -- ✨ Add support for schema 5.1.0 [PR](https://github.com/laminlabs/cellxgene-lamin/pull/97) [@Zethson](https://github.com/Zethson) -- 📝 Track all anndatas in scrna-tiledbsoma [PR](https://github.com/laminlabs/lamin-usecases/pull/153) [@Koncopd](https://github.com/Koncopd) -- Fix cellxgene-schema validate numpy error [PR](https://github.com/laminlabs/cellxgene-lamin/pull/95) [@Zethson](https://github.com/Zethson) -- 📝 Consistently use slice for arrays [PR](https://github.com/laminlabs/cellxgene-lamin/pull/93) [@Koncopd](https://github.com/Koncopd) -- 📝 Edit cellxgene guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/92) [@Koncopd](https://github.com/Koncopd) -- 📝 Reorganize and integrate tiledbsoma guide [PR](https://github.com/laminlabs/cellxgene-lamin/pull/91) [@Koncopd](https://github.com/Koncopd) -- 📝 Link access pages [PR](https://github.com/laminlabs/lamin-usecases/pull/152) [@Zethson](https://github.com/Zethson) -- 🏗️ Simplify repo and prettify notebooks [PR](https://github.com/laminlabs/lamin-mlops/pull/19) [@falexwolf](https://github.com/falexwolf)