chore: migrate to src layout, config in setup.cfg, drop `versione…

…er` (#206)

* migrate to `src` layout and configuration in `setup.cfg` , drop `versioneer`

* drop devcontainer

* drop 3.7 support

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.bumpversion.cfg

@@ -0,0 +1,28 @@
+[bumpversion]
+current_version = 0.8.0-dev0
+commit = True
+tag = False
+parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P<build>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?
+serialize =
+    {major}.{minor}.{patch}-{release}+{build}
+    {major}.{minor}.{patch}+{build}
+    {major}.{minor}.{patch}-{release}
+    {major}.{minor}.{patch}
+
+[bumpversion:part:release]
+optional_value = production
+first_value = dev
+values =
+    dev
+    production
+
+[bumpverion:part:build]
+values = [0-9A-Za-z-]+
+
+[bumpversion:file:setup.cfg]
+search = version = {current_version}
+replace = version = {new_version}
+
+[bumpversion:file:src/pyepal/version.py]
+search = VERSION = "{current_version}"
+replace = VERSION = "{new_version}"

.coveragerc

@@ -5,8 +5,6 @@ omit =
         *__init__*
         */usr/local/lib*
         *test*
-        *_version
-        *versioneer
         *setup*
         *examples/*
         *_hypervolume.py*
@@ -16,8 +14,6 @@ omit =
         *__init__*
         */usr/local/lib*
         *test*
-        *_version*
-        *versioneer*
         *setup*
         *examples/*
         *_hypervolume.py*

.deepsource.toml

@@ -0,0 +1,24 @@
+version = 1
+
+test_patterns = ["tests/**"]
+
+exclude_patterns = [
+  "docs/",
+  "dev/",
+  "binder/"
+]
+
+[[analyzers]]
+name = "python"
+enabled = true
+
+  [analyzers.meta]
+  runtime_version = "3.x.x"
+
+[[transformers]]
+name = "black"
+enabled = true
+
+[[transformers]]
+name = "isort"
+enabled = true

.github/workflows/python_package.yml

@@ -14,7 +14,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macOS-latest]
-        python-version: [3.7, 3.8]
+        python-version: [3.8]
     runs-on: ${{ matrix.os }}
 
     steps:

.pre-commit-config.yaml

@@ -34,38 +34,31 @@ repos:
         language: python
         types: [text]
 
-  # - repo: https://github.com/pre-commit/mirrors-mypy
-  #   rev: "" # Use the sha / tag you want to point at
-  #   hooks:
-  #     - id: mypy
-  #       exclude: (versioneer.py|_version.py|^docs/)
-
-
-  -   repo: https://github.com/psf/black
-      rev: 22.3.0
-      hooks:
-      -   id: black
-          language_version: python3
-          name: black
-          exclude: versioneer.py|pyepal/_version.py|^docs/
-          entry: black
-          types: [python]
+  - repo: https://github.com/psf/black
+    rev: 22.3.0
+    hooks:
+      - id: black
+        language_version: python3
+        name: black
+        exclude: ^docs/
+        entry: black
+        types: [python]
 
-  -   repo: https://github.com/PyCQA/isort
-      rev: '5.10.1'  # Use the revision sha / tag you want to point at
-      hooks:
-      -   id: isort
-          name: isort
-          language: python
-          exclude: versioneer.py|pyepal/_version.py|^docs/
-          types: [python]
-          entry: isort
+  - repo: https://github.com/PyCQA/isort
+    rev: "5.10.1" # Use the revision sha / tag you want to point at
+    hooks:
+      - id: isort
+        name: isort
+        language: python
+        exclude: ^docs/
+        types: [python]
+        entry: isort
 
   - repo: local
     hooks:
       - id: pylint
         language: python
         types: [file, python]
-        exclude: versioneer.py|pyepal/_version.py|^docs|pyepal/pal/_hypervolume.py|pyepal/models/coregionalized.py/tests
+        exclude: ^docs|pyepal/pal/_hypervolume.py|pyepal/models/coregionalized.py/tests
         name: pylint
         entry: pylint

.pylintrc

@@ -1,6 +1,6 @@
 [MASTER]
 ignore=docs
-ignore_patterns=versioneer.py,*version.py,*hypervolume.py,models.coregionalized.py
+ignore_patterns=*hypervolume.py,models.coregionalized.py
 
 
 [MESSAGES CONTROL]

docs/conf.py

@@ -14,7 +14,7 @@
 import os
 import sys
 
-from pyepal import __version__
+from pyepal.version import VERSION
 
 sys.path.insert(0, os.path.abspath(".."))
 
@@ -26,7 +26,7 @@
 author = "Kevin Maik Jablonka, Brian Yoo, Berend Smit"
 
 # The full version, including alpha/beta/rc tags
-release = __version__
+release = VERSION
 
 
 # -- General configuration ---------------------------------------------------