diff --git a/docs/tutorial/tutorial.md b/docs/tutorial/tutorial.md index 1d0d4f55..bee9905b 100755 --- a/docs/tutorial/tutorial.md +++ b/docs/tutorial/tutorial.md @@ -73,6 +73,7 @@ exemplar-001 or exemplar-002 ├── ... └── ... ``` +**NOTE**: For this tutorial, we demonstrate running the pipeline with the input of raw images and illumination profiles (in `illumination`). To see a more comprehensive description of inputs for MCMICRO, please see the [**Input** section under **Inputs/Outputs**](../io.md#input). By default, `exemplar-001` contains cycles 6 through 8, while exemplar-002 contains all 10 cycles. Use `nextflow run labsyspharm/mcmicro/exemplar.nf --help` to learn how to download a different range of cycles for each exemplar.