From 54d7f99a9aacf1646541fa402245534935993e61 Mon Sep 17 00:00:00 2001
From: labouz <lb3338@drexel.edu>
Date: Fri, 17 Dec 2021 14:46:29 -0500
Subject: [PATCH] update version

---
 DESCRIPTION           | 5 +++--
 NAMESPACE             | 2 ++
 R/fetch_fulltext.R    | 4 ++--
 man/fetch_fulltext.Rd | 4 ++--
 4 files changed, 9 insertions(+), 6 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 2a22170..0b532b9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: PMCfetchR
 Title: Extract Full-Text Articles from NIH NCBI's PMC Articles Dataset in AWS Cloud
-Version: 0.0.0.9000
+Version: 1.0.0
 Authors@R: 
     person("Layla", "Bouzoubaa", , "lb3338@drexel.edu", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-6616-0950"))
@@ -23,7 +23,8 @@ Imports:
     aws.s3,
     magrittr,
     rlang,
-    xml2
+    xml2,
+    stringr
 Suggests: 
     testthat (>= 3.0.0)
 Config/testthat/edition: 3
diff --git a/NAMESPACE b/NAMESPACE
index de2764c..645d61a 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -9,6 +9,8 @@ importFrom(jsonlite,fromJSON)
 importFrom(magrittr,"%>%")
 importFrom(purrr,map_df)
 importFrom(rlang,arg_match)
+importFrom(stringr,str_extract)
+importFrom(stringr,str_remove)
 importFrom(tibble,tibble)
 importFrom(tidypmc,pmc_text)
 importFrom(utils,capture.output)
diff --git a/R/fetch_fulltext.R b/R/fetch_fulltext.R
index dc74277..02311c8 100644
--- a/R/fetch_fulltext.R
+++ b/R/fetch_fulltext.R
@@ -14,7 +14,7 @@
 #' @importFrom magrittr %>%
 #' @importFrom rlang arg_match
 #' @importFrom xml2 read_xml
-#' @importFrom stringr str_extract
+#' @importFrom stringr str_extract str_remove
 #' @export
 #'
 #' @examples
@@ -72,7 +72,7 @@ fetch_fulltext <- function(id, vars = c("all", "section", "paragraph", "sentence
   # FAILSAFE FUNCTION THAT GETS CALLED IF NOTHING IS RETURNED FROM AWS------------
   fetch_paper_eutility <- function (pmcid) {
     # strip 'PMC' from PMCID
-    id <- str_remove(pmcid, "PMC")
+    id <- stringr::str_remove(pmcid, "PMC")
     api <- paste0("https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=",id)
 
     response <- xml2::read_xml(api)
diff --git a/man/fetch_fulltext.Rd b/man/fetch_fulltext.Rd
index 05d153c..fecff0a 100644
--- a/man/fetch_fulltext.Rd
+++ b/man/fetch_fulltext.Rd
@@ -19,6 +19,6 @@ a tidy \code{data.frame} containing each manuscript retrieved, tokenized by sent
 Get full-text articles from PMC Open Access Subset in an AWS S3 bucket
 }
 \examples{
-fetch_fulltext("PMC2480524")
-fetch_fulltext("PMC2480524", vars = c("text"))
+fetch_fulltext("PMC5465829")
+fetch_fulltext("PMC5465829", vars = c("text"))
 }