Hi Im wondering how to generate the example.vcf haplotype file format

[CXZheng7]

I simulated the example.vcf file format and split a phased VCF file into VCF file containing two haplotypes (CHR like 3L 3R) by my own python script. I made sure the haplotype VCF file can be processed by other VCF file tools (VCFtools, bcftools). But ReLERNN.SIMILATE told me 'Error: chromosomes have different sample sizes!'.
Please help me, and told how to get the haplotype VCF file quickly. THANKS!!!

[andrewkern]

if you have different size samples on different chromosomes please split the vcf files so that they have consistent sample sizes