From 9cfb3d4e0dfb3c562444e8ff23f11fc4fe363d93 Mon Sep 17 00:00:00 2001 From: kojix2 <2xijok@gmail.com> Date: Sat, 21 Oct 2023 21:29:56 +0900 Subject: [PATCH] Use kojix2/odgi --- .github/workflows/ci.yml | 2 +- .gitmodules | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f08e176..de8a590 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,7 +21,7 @@ jobs: - if: matrix.os == 'macos' run: brew update && brew install jemalloc - if: matrix.os == 'ubuntu' - run: bundle exec rake odgi:build + run: bundle exec rake jemalloc:build && bundle exec rake odgi:build - if: matrix.os == 'macos' run: CC=/opt/homebrew/opt/llvm/bin/clang CXX=/opt/homebrew/opt/llvm/bin/clang++ LDFLAGS=-L/opt/homebrew/lib bundle exec rake odgi:build - run: bundle exec rake compile diff --git a/.gitmodules b/.gitmodules index 6ff568a..11ff20d 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,6 +1,6 @@ [submodule "odgi"] path = odgi - url = https://github.com/pangenome/odgi + url = https://github.com/kojix2/odgi [submodule "jemalloc"] path = jemalloc url = https://github.com/jemalloc/jemalloc