notes-detailed

# First check that the R (>= 3.2.0) in DESCRIPTION is not bogus
\cp ~/.Rprofile ~/.Rprofile.https
\cp ~/.Rprofile.http ~/.Rprofile
~/local/3.2.0/bin/R CMD build glmm
~/local/3.2.0/bin/R CMD check glmm_*.tar.gz --run-donttest
\cp ~/.Rprofile.https ~/.Rprofile

# Now check against r-current using all compiler warnings
export R_MAKEVARS_USER=`pwd`/myMakevars
R CMD build glmm
R CMD check glmm_*.tar.gz --run-donttest
sed -n '/gcc/,/installing to/p' glmm.Rcheck/00install.out
# a lot of complaints about unused arguments.  Fix.
# now checks OK

# Now check against r-devel with --as-cran
~/local/devel/bin/R CMD check glmm_*.tar.gz --as-cran --run-donttest

# Now check against r-current with --use-valgrind

########## REVISED DOWN TO HERE ##########

# Notes added by Charlie
# Do this if want extra gcc checks that are not allowed in Makevars
# Look in glmm.Rcheck/00install.out to see warning messages
export R_MAKEVARS_USER=`pwd`/myMakevars
# Note that file myMakevars must be a copy of glmm/src/Makevars
#     with extra stuff added


rm *.tar.gz # if version number has changed
R CMD build glmm
R CMD check glmm_*.tar.gz

# to check with valgrind
R CMD check --use-valgrind glmm_*.tar.gz

# before submission this should be done using R-devel
R CMD check --as.cran glmm_*.tar.gz

# old notes, don't need to do this stuff
\rm -f glmm/src/*.{o,so}
R CMD build glmm
R CMD build glmm --no-build-vignettes
R CMD check glmm --as-cran
R CMD check glmm --use-valgrind
R CMD check glmm --use-valgrind -00

R -d valgrind --vanilla
R -d "valgrind --tool=memcheck --track-origins=yes" --vanilla