-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathMakefile
132 lines (112 loc) · 4.38 KB
/
Makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
.PHONY: data clean env ec2 create_kernel test
#################################################################################
# GLOBALS #
#################################################################################
PROJECT_DIR := $(shell dirname $(realpath $(lastword $(MAKEFILE_LIST))))
PROJECT_NAME = safegraph-data-utilities
ENV_NAME = sg-data
# make conda commands available in the script, notably for activation
#CONDA_BASE=$(conda info --base)
#source $CONDA_BASE/etc/profile.d/conda.sh
#################################################################################
# COMMANDS #
#################################################################################
## Make Dataset
data:
. activate $(ENV_NAME)
python src/data/make_dataset.py
@echo ">>> Data processed."
## Delete all compiled Python files
clean:
find . -type f -name "*.py[co]" -delete
find . -type d -name "__pycache__" -delete
## Build the local environment from the environment file
env:
conda env create -f environment.yml
conda activate $(ENV_NAMEs)
python -m pip install -e .
@echo ">>> New conda environment, $(ENV_NAME), created. Activate with:\n- source activate $(ENV_NAME)"
# If working in an EC2 environment, set everything up - BETA FEATURE
ec2:
# get, install and configure miniconda
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh
chmod 755 ~/miniconda.sh
~/miniconda.sh -b -p $(HOME)/miniconda -u
~/miniconda/bin/conda init
# create and activate the project conda environment
~/miniconda/bin/conda env create -f ./environment.yml
# install the local package
~/miniconda/bin/conda run -n $(ENV_NAME) python -m pip install -e .
# configure jupyter for remote access with password "jovyan"
~/miniconda/bin/conda run -n sg-data jupyter notebook --generate-config
sed -i '1 i\c.NotebookApp.port = 8888' ~/.jupyter/jupyter_notebook_config.py
sed -i '1 i\c.NotebookApp.password = u"sha1:b37cb398255d:3f676cfe9b00e0c485385b435584ae5518bd14a4"' ~/.jupyter/jupyter_notebook_config.py
sed -i '1 i\c.NotebookApp.ip = "0.0.0.0"' ~/.jupyter/jupyter_notebook_config.py
# useful for installing the kernel for the environment
create_kernel:
python -m ipykernel install --user --name $(ENV_NAME) --display-name "$(PROJECT_NAME)"
## Run all tests in module
test:
. activate $(ENV_NAME)
pytest
#################################################################################
# PROJECT RULES #
#################################################################################
#################################################################################
# Self Documenting Commands #
#################################################################################
.DEFAULT_GOAL := help
# Inspired by <http://marmelab.com/blog/2016/02/29/auto-documented-makefile.html>
# sed script explained:
# /^##/:
# * save line in hold space
# * purge line
# * Loop:
# * append newline + line to hold space
# * go to next line
# * if line starts with doc comment, strip comment character off and loop
# * remove target prerequisites
# * append hold space (+ newline) to line
# * replace newline plus comments by `---`
# * print line
# Separate expressions are necessary because labels cannot be delimited by
# semicolon; see <http://stackoverflow.com/a/11799865/1968>
.PHONY: help
help:
@echo "$$(tput bold)Available rules:$$(tput sgr0)"
@echo
@sed -n -e "/^## / { \
h; \
s/.*//; \
:doc" \
-e "H; \
n; \
s/^## //; \
t doc" \
-e "s/:.*//; \
G; \
s/\\n## /---/; \
s/\\n/ /g; \
p; \
}" ${MAKEFILE_LIST} \
| LC_ALL='C' sort --ignore-case \
| awk -F '---' \
-v ncol=$$(tput cols) \
-v indent=19 \
-v col_on="$$(tput setaf 6)" \
-v col_off="$$(tput sgr0)" \
'{ \
printf "%s%*s%s ", col_on, -indent, $$1, col_off; \
n = split($$2, words, " "); \
line_length = ncol - indent; \
for (i = 1; i <= n; i++) { \
line_length -= length(words[i]) + 1; \
if (line_length <= 0) { \
line_length = ncol - indent - length(words[i]) - 1; \
printf "\n%*s ", -indent, " "; \
} \
printf "%s ", words[i]; \
} \
printf "\n"; \
}' \
| more $(shell test $(shell uname) = Darwin && echo '--no-init --raw-control-chars')