template_filtering.par

### ____________________________________________________________________ ###
###                                                                      ###
### SoFiA 2.1.1 (default_parameters.par) - Source Finding Application    ###
### Copyright (C) 2020 Tobias Westmeier                                  ###
### ____________________________________________________________________ ###
###                                                                      ###
### Address:  Tobias Westmeier                                           ###
###           ICRAR M468                                                 ###
###           The University of Western Australia                        ###
###           35 Stirling Highway                                        ###
###           Crawley WA 6009                                            ###
###           Australia                                                  ###
###                                                                      ###
### E-mail:   tobias.westmeier [at] uwa.edu.au                           ###
### ____________________________________________________________________ ###
###                                                                      ###
### This program is free software: you can redistribute it and/or modify ###
### it under the terms of the GNU General Public License as published by ###
### the Free Software Foundation, either version 3 of the License, or    ###
### (at your option) any later version.                                  ###
###                                                                      ###
### This program is distributed in the hope that it will be useful,      ###
### but WITHOUT ANY WARRANTY; without even the implied warranty of       ###
### MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the         ###
### GNU General Public License for more details.                         ###
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### You should have received a copy of the GNU General Public License    ###
### along with this program. If not, see http://www.gnu.org/licenses/.   ###
### ____________________________________________________________________ ###
###                                                                      ###


# Default parameters for generating a continuum filtered cube in SoFiA-2
# Please do not modify!


# Global settings

pipeline.verbose           =  false
pipeline.pedantic          =  false
pipeline.threads           =  24


# Input

input.data                 =  /PATH/TASKID/BEAM/HI_image_cubeN.fits
input.region               =  
input.gain                 =  
input.noise                =  
input.weights              =  
input.mask                 =  
input.invert               =  false


# Flagging

flag.region                =
flag.catalog               =
flag.radius                =  0
flag.auto                  =  pixels
flag.threshold             =  4.5
flag.radiusSpatial         =  0
flag.log                   =  false


# Continuum subtraction

contsub.enable             =  false
contsub.order              =  0
contsub.threshold          =  2.0
contsub.shift              =  4
contsub.padding            =  3


# Noise scaling

scaleNoise.enable          =  false
scaleNoise.mode            =  spectral
scaleNoise.statistic       =  mad
scaleNoise.fluxRange       =  negative
scaleNoise.windowXY        =  25
scaleNoise.windowZ         =  15
scaleNoise.gridXY          =  0
scaleNoise.gridZ           =  0
scaleNoise.interpolate     =  false
scaleNoise.scfind          =  true


# Ripple filter

rippleFilter.enable        =  false
rippleFilter.statistic     =  median
rippleFilter.windowXY      =  31
rippleFilter.windowZ       =  15
rippleFilter.gridXY        =  0
rippleFilter.gridZ         =  0
rippleFilter.interpolate   =  false


# S+C finder

scfind.enable              =  false
scfind.kernelsXY           =  0, 3, 6
scfind.kernelsZ            =  0, 3, 7
scfind.threshold           =  4.0
scfind.replacement         =  2.0
scfind.statistic           =  mad
scfind.fluxRange           =  negative


# Threshold finder

threshold.enable           =  false
threshold.threshold        =  5.0
threshold.mode             =  relative
threshold.statistic        =  mad
threshold.fluxRange        =  negative


# Linker

linker.enable              =  false
linker.radiusXY            =  1
linker.radiusZ             =  2
linker.minSizeXY           =  5
linker.minSizeZ            =  5
linker.maxSizeXY           =  0
linker.maxSizeZ            =  0
linker.minPixels           =  0
linker.maxPixels           =  0
linker.minFill             =  0.0
linker.maxFill             =  0.0
linker.positivity          =  false
linker.keepNegative        =  false


# Reliability

reliability.enable         =  false
reliability.parameters     =  peak, sum, mean
reliability.threshold      =  0.9
reliability.scaleKernel    =  0.5
reliability.minSNR         =  3.0
reliability.minPixels      =  0
reliability.catalog        =
reliability.plot           =  true
reliability.debug          =  false


# Mask dilation

dilation.enable            =  false
dilation.iterationsXY      =  10
dilation.iterationsZ       =  5
dilation.threshold         =  0.001


# Parameterisation

parameter.enable           =  false
parameter.wcs              =  true
parameter.physical         =  false
parameter.prefix           =  SoFiA
parameter.offset           =  false


# Output

output.directory           =  
output.filename            =  
output.writeCatASCII       =  false
output.writeCatXML         =  false
output.writeCatSQL         =  false
output.writeNoise          =  true
output.writeFiltered       =  true
output.writeMask           =  true
output.writeMask2d         =  true
output.writeRawMask        =  false
output.writeMoments        =  true
output.writeCubelets       =  false
output.marginCubelets      =  10
output.thresholdMom12      =  0.0
output.overwrite           =  true


# Updated parameters