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index.html
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<html ng-app='aquaverse' ng-controller="aquaverseCtrl" id="aquaverseCtrl" ng-cloak>
<head>
<title>Aquarium</title>
<meta name="description" content="The Aquarium Laboratory Operating System">
<meta name="author" content="Eric Klavins">
<meta name="keywords"
content="Aquarium, Molecular Biology, Lab Automation, Protocols, Workflows, Reproducibility, LIMS, Synthetic Biology">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<script src="https://www.aquarium.bio/node_modules/angular/angular.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/angular-animate/angular-animate.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/angular-aria/angular-aria.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/angular-messages/angular-messages.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/jquery/dist/jquery.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/angular-material/angular-material.min.js"></script>
<script src="https://www.aquarium.bio/node_modules/showdown/dist/showdown.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.13.1/highlight.min.js"></script>
<script src="https://www.aquarium.bio/js/highlight.js"></script>
<script src="https://www.aquarium.bio/js/aquaverse.js"></script>
<script src="js/definitions.js"></script>
<link rel="icon" href="https://www.aquarium.bio/aqicon.ico" type="image/x-icon" />
<link rel="shortcut icon" href="https://www.aquarium.bio/aqicon.ico" type="image/x-icon" />
<link rel="stylesheet" href="https://www.aquarium.bio/node_modules/angular-material/angular-material.min.css">
<link rel="stylesheet" href="https://www.aquarium.bio/node_modules/github-markdown-css/github-markdown.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.13.1/styles/vs.min.css">
<link rel="stylesheet" href="https://www.aquarium.bio/css/aquaverse.css">
</head>
<body style="position: relative">
<header class="logo-container">
<h1 class="logo md-display-4"><span class="aq">Aq</span></h1>
<h2 class="tagline md-title" ng-bind-html="tagline"></h2>
</header>
<md-toolbar flex class="header">
<div class="md-toolbar-tools main-toolbar">
<svg xmlns="http://www.w3.org/2000/svg"
viewBox="0 0 24 24" width="30" height="30"
class="md-toolbar-item menu-icon"
ng-click="open_sidenav()">
<path d="M3 18h18v-2H3v2z"></path>
<path d="M3 13h18v-2H3v2z"></path>
<path d="M3 6v2h18V6H3z"></path>
</svg>
<h2 class="md-toolbar-item md-headline">
<span class="aquarium">
<a href="#" ng-click="easy_select('Overview', 'Introduction')">
PROTOCOLS
</a>
</span>
<span class="location">/ {{title}}</span>
</h2>
</div>
</md-toolbar>
<div layout="row">
<md-sidenav
class="md-sidenav-left sidenav"
md-component-id="sidenav"
md-is-locked-open="$mdMedia('gt-sm')"
id="sidenav">
<ul class="nav-list">
<li ng-repeat="section in navigation">
<div class="category-container"
ng-click="section.open = !section.open">
<div class="md-body category-title">
{{section.category}}
</div>
</div>
<ul ng-show="section.open" class="nav-sublist">
<li ng-repeat="content in section.contents"
ng-class="link_class(section,content)">
<a class="clickable" ng-click="select(section,content)">
{{content.name}}
</a>
</li>
</ul>
</li>
</ul>
</md-sidenav>
<md-content flex class="main-container">
<!-- Content from Aquarium Documtation -->
<div flex class="main main-frame"
ng-if="state.active_content.type == 'aquarium-doc' || state.active_content.type == 'local-webpage'">
<iframe ng-attr-src="{{state.iframe_url}}"
ng-if="state.iframe_url"
class="content-frame">
</iframe>
</div>
<!-- Local md content -->
<div id="main-md"
class="main markdown-body"
ng-if="state.active_content.type == 'local-md'">
</div>
<!-- Local html content -->
<div id="main-html"
class="main"
ng-if="state.active_content.type == 'local-html'">
</div>
</md-content>
</div>
</body>
</html>