diff --git a/docs/_modules/seqgra/comparator/curvetablecomparator.html b/docs/_modules/seqgra/comparator/curvetablecomparator.html index 724ead1..ac8e706 100644 --- a/docs/_modules/seqgra/comparator/curvetablecomparator.html +++ b/docs/_modules/seqgra/comparator/curvetablecomparator.html @@ -184,7 +184,10 @@

Source code for seqgra.comparator.curvetablecomparator

 """
-MIT - CSAIL - Gifford Lab - seqgra
+Curve Table Comparator for PR and ROC curve information
+
+Classes:
+    - :class:`~seqgra.comparator.curvetablecomparator.CurveTableComparator`: collects PR and ROC curve information in text file
 """
 from typing import List, Optional
 import os
diff --git a/docs/_modules/seqgra/comparator/fietablecomparator.html b/docs/_modules/seqgra/comparator/fietablecomparator.html
index 08780cc..a5fc107 100644
--- a/docs/_modules/seqgra/comparator/fietablecomparator.html
+++ b/docs/_modules/seqgra/comparator/fietablecomparator.html
@@ -184,7 +184,10 @@
             
   
Source code for seqgra.comparator.fietablecomparator
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Feature Importance Evaluator Table Comparator for feature importance measures
+
+Classes:
+    - :class:`~seqgra.comparator.fietablecomparator.FIETableComparator`: collects feature importance evaluator information in text file
 """
 from typing import List, Optional
 import os
diff --git a/docs/_modules/seqgra/comparator/prcomparator.html b/docs/_modules/seqgra/comparator/prcomparator.html
index 7febecd..2ce8568 100644
--- a/docs/_modules/seqgra/comparator/prcomparator.html
+++ b/docs/_modules/seqgra/comparator/prcomparator.html
@@ -184,11 +184,10 @@
             
   
Source code for seqgra.comparator.prcomparator
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Creates PR curves of different models
 
-ROC comparator: creates ROC curves of different models
-
-@author: Konstantin Krismer
+Classes:
+    - :class:`~seqgra.comparator.prcomparator.PRComparator`: creates PR curves from various grammars and architectures
 """
 from typing import List, Optional
 import os
diff --git a/docs/_modules/seqgra/comparator/roccomparator.html b/docs/_modules/seqgra/comparator/roccomparator.html
index fd492cf..5689a02 100644
--- a/docs/_modules/seqgra/comparator/roccomparator.html
+++ b/docs/_modules/seqgra/comparator/roccomparator.html
@@ -184,11 +184,10 @@
             
   
Source code for seqgra.comparator.roccomparator
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Creates ROC curves of different models
 
-ROC comparator: creates ROC curves of different models
-
-@author: Konstantin Krismer
+Classes:
+    - :class:`~seqgra.comparator.roccomparator.ROCComparator`: creates ROC curves from various grammars and architectures
 """
 from typing import List, Optional
 import os
diff --git a/docs/_modules/seqgra/comparator/tablecomparator.html b/docs/_modules/seqgra/comparator/tablecomparator.html
index 3f32a1f..8c300e3 100644
--- a/docs/_modules/seqgra/comparator/tablecomparator.html
+++ b/docs/_modules/seqgra/comparator/tablecomparator.html
@@ -184,7 +184,10 @@
             
   
Source code for seqgra.comparator.tablecomparator
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Table Comparator for grammar and model information
+
+Classes:
+    - :class:`~seqgra.comparator.tablecomparator.TableComparator`: collects grammar and model information in text file
 """
 from typing import List, Optional, Tuple
 import os
diff --git a/docs/searchindex.js b/docs/searchindex.js
index 21de334..2bbebcc 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
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,until:78,up:[65,78],upon:11,upsampler_bas:38,upsampler_block:38,upsampler_kernel_s:38,upsampler_scal:38,us:[2,3,4,6,7,10,11,12,15,30,38,39,48,60,65,74,93,99,102,103,104,106,116],usag:[2,3,4,5,6,65],use_inp:32,use_input:51,use_simple_activ:38,user:[30,38,39,48],usual:[10,74],util:[6,8,11,38,39,82,83,129],v:[2,3,4,5,34,57],val:4,val_:78,valid:[2,5,7,8,10,12,22,60,65,71,72,74,75,78,80,84,104,106],valid_condit:[102,104],valid_sequence_el:[102,104],validate_data:[67,71,72,74,75,80,84],validation_dataset:[79,83],validation_set_fract:110,valu:[7,8,30,38,39,40,48,65,74,78,93,107],valueerror:[65,107],values_over_entire_backselect:65,vanilla:47,vanilladifferencegradexplain:26,vanillagradexplain:[26,32],variabl:[7,40,74],variant:65,variou:[6,15],version:[2,3,4,5,6,38,39,65,104,106],view:12,violin:8,visibl:[2,3],w:[30,40,48],wa:6,wai:[7,65],want:40,warn:2,we:[8,10,11,38,39,65],weight:[12,30,38,39,48],well:[38,39],were:[12,30,48,65],weren:[30,48],what:[6,65],when:[10,38,39,65],where:[4,7,8,65],whether:[30,38,39,48,71,72,74,75,80,84],which:[3,7,8,10,11,12,65],whole:[38,39],whose:[11,38,39,65],wide:[10,12],width:[7,8,10],width_per_group:39,window:[7,8,10,12,14],window_shap:33,within:[38,39,78],without:74,won:[38,39],word:65,work:11,wrap:[38,39],write:61,write_analysis_script:110,write_data_definition_fil:110,write_data_definition_to_fil:[124,126],write_model_definition_fil:110,write_model_definition_to_fil:[125,127],write_session_info:[70,71,79,80,83,84,122],writer:[6,14],x:[2,3,8,12,14,22,31,38,39,42,43,44,45,46,47,49,50,51,52,53,54,55,56,57,58,59,65,66,70,71,72,74,75,79,80,82,83,84,107,128],x_sis_i:65,x_train:[71,72,74,75,80,84],x_val:[71,72,74,75,80,84],xi:57,xml:[2,3,4,7,8,10,12,101,104,105,106,123,129],xml_config:[104,106],xmldatadefinitionpars:[14,101],xmldatadefinitionwrit:[14,123],xmlhelper:[14,101],xmlmodeldefinitionpars:[14,101],xmlmodeldefinitionwrit:[14,123],xpu:[38,39],y1:[42,47,59],y2:[42,47,59],y:[3,8,14,17,43,44,45,46,49,50,51,52,53,54,55,56,57,58,70,71,72,74,75,79,80,82,83,84,107,117],y_hat:[17,19,20,62,63],y_train:[71,72,74,75,80,84],y_true:[19,20,62,63],y_val:[71,72,74,75,80,84],yield:[38,39],you:[11,30,38,39,40,48,65],your:[11,38,39],z0:[7,12],za:[7,12],zero:[7,27,30,38,39,48,65,93],zero_grad:[38,39],zero_init_residu:39,zf:7},titles:["<no title>","Command line utilities","seqgra core functionality","seqgra attribution","seqgra ensemble","seqgra summary","seqgra","Data definition","Usage examples","Index","ID conventions","Introduction","Model definition","Python Module Index","seqgra package","seqgra.comparator package","seqgra.comparator.comparator module","seqgra.comparator.curvetablecomparator module","seqgra.comparator.fietablecomparator module","seqgra.comparator.prcomparator module","seqgra.comparator.roccomparator module","seqgra.comparator.tablecomparator module","seqgra.constants module","seqgra.evaluator package","seqgra.evaluator.evaluator module","seqgra.evaluator.explainer namespace","seqgra.evaluator.explainer.backprop module","seqgra.evaluator.explainer.deeplift module","seqgra.evaluator.explainer.ebp package","seqgra.evaluator.explainer.ebp.ebp module","seqgra.evaluator.explainer.ebp.functions module","seqgra.evaluator.explainer.feedback module","seqgra.evaluator.explainer.gradcam module","seqgra.evaluator.explainer.occlusion module","seqgra.evaluator.explainer.path module","seqgra.evaluator.explainer.patterns module","seqgra.evaluator.explainer.perturbation module","seqgra.evaluator.explainer.real_time package","seqgra.evaluator.explainer.real_time.pytorch_fixes module","seqgra.evaluator.explainer.real_time.resnet_encoder module","seqgra.evaluator.explainer.real_time.saliency_eval module","seqgra.evaluator.gradientbased package","seqgra.evaluator.gradientbased.abstractdifferencegradientevaluator module","seqgra.evaluator.gradientbased.abstractgradientevaluator module","seqgra.evaluator.gradientbased.contrastiveexcitationbackpropevaluator module","seqgra.evaluator.gradientbased.deconvevaluator module","seqgra.evaluator.gradientbased.deepliftevaluator module","seqgra.evaluator.gradientbased.differencegradientevaluator module","seqgra.evaluator.gradientbased.ebphelper module","seqgra.evaluator.gradientbased.excitationbackpropevaluator module","seqgra.evaluator.gradientbased.feedbackevaluator module","seqgra.evaluator.gradientbased.gradcamgradientevaluator module","seqgra.evaluator.gradientbased.gradientbasedevaluator module","seqgra.evaluator.gradientbased.gradientevaluator module","seqgra.evaluator.gradientbased.gradientxinputevaluator module","seqgra.evaluator.gradientbased.guidedbackpropevaluator module","seqgra.evaluator.gradientbased.integratedgradientevaluator module","seqgra.evaluator.gradientbased.nonlinearintegratedgradientevaluator module","seqgra.evaluator.gradientbased.saliencyevaluator module","seqgra.evaluator.gradientbased.smoothgradevaluator module","seqgra.evaluator.metricsevaluator module","seqgra.evaluator.predictevaluator module","seqgra.evaluator.prevaluator module","seqgra.evaluator.rocevaluator module","seqgra.evaluator.sis package","seqgra.evaluator.sis.sis module","seqgra.evaluator.sisevaluator module","seqgra.idresolver module","seqgra.learner package","seqgra.learner.bayes package","seqgra.learner.bayes.bayeshelper module","seqgra.learner.bayes.bayeslearner module","seqgra.learner.dna module","seqgra.learner.dnahelper module","seqgra.learner.learner module","seqgra.learner.protein module","seqgra.learner.proteinhelper module","seqgra.learner.tensorflow package","seqgra.learner.tensorflow.kerascallback module","seqgra.learner.tensorflow.kerashelper module","seqgra.learner.tensorflow.keraslearner module","seqgra.learner.torch package","seqgra.learner.torch.torchdataset module","seqgra.learner.torch.torchhelper module","seqgra.learner.torch.torchlearner module","seqgra.misc module","seqgra.model package","seqgra.model.data package","seqgra.model.data.alphabetdistribution module","seqgra.model.data.background module","seqgra.model.data.condition module","seqgra.model.data.datadefinition module","seqgra.model.data.datageneration module","seqgra.model.data.operation module","seqgra.model.data.rule module","seqgra.model.data.sequenceelement 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nspecifi:10,until:78,up:[65,78],upon:11,upsampler_bas:38,upsampler_block:38,upsampler_kernel_s:38,upsampler_scal:38,us:[2,3,4,6,7,10,11,12,15,30,38,39,48,60,65,74,93,99,102,103,104,106,116],usag:[2,3,4,5,6,65],use_inp:32,use_input:51,use_simple_activ:38,user:[30,38,39,48],usual:[10,74],util:[6,8,11,38,39,82,83,129],v:[2,3,4,5,34,57],val:4,val_:78,valid:[2,5,7,8,10,12,22,60,65,71,72,74,75,78,80,84,104,106],valid_condit:[102,104],valid_sequence_el:[102,104],validate_data:[67,71,72,74,75,80,84],validation_dataset:[79,83],validation_set_fract:110,valu:[7,8,30,38,39,40,48,65,74,78,93,107],valueerror:[65,107],values_over_entire_backselect:65,vanilla:47,vanilladifferencegradexplain:26,vanillagradexplain:[26,32],variabl:[7,40,74],variant:65,variou:[6,15,19,20],version:[2,3,4,5,6,38,39,65,104,106],view:12,violin:8,visibl:[2,3],w:[30,40,48],wa:6,wai:[7,65],want:40,warn:2,we:[8,10,11,38,39,65],weight:[12,30,38,39,48],well:[38,39],were:[12,30,48,65],weren:[30,48],what:[6,65],when:[10,38,39,65],where:[4,7,8,65],whether:[30,38,39,48,71,72,74,75,80,84],which:[3,7,8,10,11,12,65],whole:[38,39],whose:[11,38,39,65],wide:[10,12],width:[7,8,10],width_per_group:39,window:[7,8,10,12,14],window_shap:33,within:[38,39,78],without:74,won:[38,39],word:65,work:11,wrap:[38,39],write:61,write_analysis_script:110,write_data_definition_fil:110,write_data_definition_to_fil:[124,126],write_model_definition_fil:110,write_model_definition_to_fil:[125,127],write_session_info:[70,71,79,80,83,84,122],writer:[6,14],x:[2,3,8,12,14,22,31,38,39,42,43,44,45,46,47,49,50,51,52,53,54,55,56,57,58,59,65,66,70,71,72,74,75,79,80,82,83,84,107,128],x_sis_i:65,x_train:[71,72,74,75,80,84],x_val:[71,72,74,75,80,84],xi:57,xml:[2,3,4,7,8,10,12,101,104,105,106,123,129],xml_config:[104,106],xmldatadefinitionpars:[14,101],xmldatadefinitionwrit:[14,123],xmlhelper:[14,101],xmlmodeldefinitionpars:[14,101],xmlmodeldefinitionwrit:[14,123],xpu:[38,39],y1:[42,47,59],y2:[42,47,59],y:[3,8,14,17,43,44,45,46,49,50,51,52,53,54,55,56,57,58,70,71,72,74,75,79,80,82,83,84,107,117],y_hat:[17,19,20,62,63],y_train:[71,72,74,75,80,84],y_true:[19,20,62,63],y_val:[71,72,74,75,80,84],yield:[38,39],you:[11,30,38,39,40,48,65],your:[11,38,39],z0:[7,12],za:[7,12],zero:[7,27,30,38,39,48,65,93],zero_grad:[38,39],zero_init_residu:39,zf:7},titles:["<no title>","Command line utilities","seqgra core functionality","seqgra attribution","seqgra ensemble","seqgra summary","seqgra","Data definition","Usage examples","Index","ID conventions","Introduction","Model definition","Python Module Index","seqgra package","seqgra.comparator package","seqgra.comparator.comparator module","seqgra.comparator.curvetablecomparator module","seqgra.comparator.fietablecomparator module","seqgra.comparator.prcomparator module","seqgra.comparator.roccomparator module","seqgra.comparator.tablecomparator module","seqgra.constants module","seqgra.evaluator package","seqgra.evaluator.evaluator module","seqgra.evaluator.explainer namespace","seqgra.evaluator.explainer.backprop module","seqgra.evaluator.explainer.deeplift module","seqgra.evaluator.explainer.ebp package","seqgra.evaluator.explainer.ebp.ebp module","seqgra.evaluator.explainer.ebp.functions module","seqgra.evaluator.explainer.feedback module","seqgra.evaluator.explainer.gradcam module","seqgra.evaluator.explainer.occlusion module","seqgra.evaluator.explainer.path module","seqgra.evaluator.explainer.patterns module","seqgra.evaluator.explainer.perturbation module","seqgra.evaluator.explainer.real_time package","seqgra.evaluator.explainer.real_time.pytorch_fixes module","seqgra.evaluator.explainer.real_time.resnet_encoder module","seqgra.evaluator.explainer.real_time.saliency_eval module","seqgra.evaluator.gradientbased package","seqgra.evaluator.gradientbased.abstractdifferencegradientevaluator module","seqgra.evaluator.gradientbased.abstractgradientevaluator module","seqgra.evaluator.gradientbased.contrastiveexcitationbackpropevaluator module","seqgra.evaluator.gradientbased.deconvevaluator module","seqgra.evaluator.gradientbased.deepliftevaluator module","seqgra.evaluator.gradientbased.differencegradientevaluator module","seqgra.evaluator.gradientbased.ebphelper module","seqgra.evaluator.gradientbased.excitationbackpropevaluator module","seqgra.evaluator.gradientbased.feedbackevaluator module","seqgra.evaluator.gradientbased.gradcamgradientevaluator module","seqgra.evaluator.gradientbased.gradientbasedevaluator module","seqgra.evaluator.gradientbased.gradientevaluator module","seqgra.evaluator.gradientbased.gradientxinputevaluator module","seqgra.evaluator.gradientbased.guidedbackpropevaluator module","seqgra.evaluator.gradientbased.integratedgradientevaluator module","seqgra.evaluator.gradientbased.nonlinearintegratedgradientevaluator module","seqgra.evaluator.gradientbased.saliencyevaluator module","seqgra.evaluator.gradientbased.smoothgradevaluator module","seqgra.evaluator.metricsevaluator module","seqgra.evaluator.predictevaluator module","seqgra.evaluator.prevaluator module","seqgra.evaluator.rocevaluator module","seqgra.evaluator.sis package","seqgra.evaluator.sis.sis module","seqgra.evaluator.sisevaluator module","seqgra.idresolver module","seqgra.learner package","seqgra.learner.bayes package","seqgra.learner.bayes.bayeshelper module","seqgra.learner.bayes.bayeslearner module","seqgra.learner.dna module","seqgra.learner.dnahelper module","seqgra.learner.learner module","seqgra.learner.protein module","seqgra.learner.proteinhelper module","seqgra.learner.tensorflow package","seqgra.learner.tensorflow.kerascallback module","seqgra.learner.tensorflow.kerashelper module","seqgra.learner.tensorflow.keraslearner module","seqgra.learner.torch package","seqgra.learner.torch.torchdataset module","seqgra.learner.torch.torchhelper module","seqgra.learner.torch.torchlearner module","seqgra.misc module","seqgra.model package","seqgra.model.data package","seqgra.model.data.alphabetdistribution module","seqgra.model.data.background module","seqgra.model.data.condition module","seqgra.model.data.datadefinition module","seqgra.model.data.datageneration module","seqgra.model.data.operation module","seqgra.model.data.rule module","seqgra.model.data.sequenceelement module","seqgra.model.data.spacingconstraint module","seqgra.model.model package","seqgra.model.model.architecture module","seqgra.model.model.modeldefinition module","seqgra.model.model.operation module","seqgra.parser package","seqgra.parser.datadefinitionparser module","seqgra.parser.modeldefinitionparser module","seqgra.parser.xmldatadefinitionparser module","seqgra.parser.xmlhelper module","seqgra.parser.xmlmodeldefinitionparser module","seqgra.schema module","seqgra.seqgra module","seqgra.seqgraa module","seqgra.seqgrae module","seqgra.seqgras module","seqgra.simulator package","seqgra.simulator.backgroundgenerator module","seqgra.simulator.example module","seqgra.simulator.examplegenerator module","seqgra.simulator.heatmap package","seqgra.simulator.heatmap.heatmap module","seqgra.simulator.motif package","seqgra.simulator.motif.ess module","seqgra.simulator.motif.kld module","seqgra.simulator.motif.motifinfo module","seqgra.simulator.simulator module","seqgra.writer package","seqgra.writer.datadefinitionwriter module","seqgra.writer.modeldefinitionwriter module","seqgra.writer.xmldatadefinitionwriter module","seqgra.writer.xmlmodeldefinitionwriter module","Simulators, Learners, Evaluators, Comparators","output folder structure"],titleterms:{"case":8,"function":[2,30],"import":8,about:6,abstractdifferencegradientevalu:42,abstractgradientevalu:43,across:8,alphabetdistribut:88,architectur:[12,98],argument:[2,3,4,5],attribut:3,background:[7,89],backgroundgener:113,backprop:26,base:8,bay:[69,70,71],bayeshelp:70,bayeslearn:71,citat:11,collect:8,command:[1,8],commonli:8,compar:[8,15,16,17,18,19,20,21,128],condit:[7,90],constant:22,content:28,contrastiveexcitationbackpropevalu:44,convent:10,core:2,curv:8,curvetablecompar:17,data:[7,8,87,88,89,90,91,92,93,94,95,96],datadefinit:91,datadefinitionpars:102,datadefinitionwrit:124,datagener:92,deconvevalu:45,deeplift:27,deepliftevalu:46,definit:[7,8,12],deriv:8,descriptor:10,differencegradientevalu:47,dna:72,dnahelp:73,document:6,ebp:[28,29,30],ebphelp:48,element:7,ensembl:4,ess:119,eval:8,evalu:[8,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,128],exampl:[8,114],examplegener:115,excitationbackpropevalu:49,experiment:8,explain:[25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40],extern:8,featur:8,feedback:31,feedbackevalu:50,fi:8,fietablecompar:18,folder:129,from:8,fund:11,gener:[7,8,12],gradcam:32,gradcamgradientevalu:51,gradient:8,gradientbas:[41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59],gradientbasedevalu:52,gradientevalu:53,gradientxinputevalu:54,grammar:[8,10],guidedbackpropevalu:55,heatmap:[116,117],id:10,idresolv:67,index:[9,13],inform:[7,12],instal:11,integratedgradientevalu:56,introduct:11,kerascallback:78,kerashelp:79,keraslearn:80,kld:120,learner:[68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,128],line:1,loss:12,main:6,metric:8,metricsevalu:60,misc:85,model:[8,10,12,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100],modeldefinit:99,modeldefinitionpars:103,modeldefinitionwrit:125,modul:[13,16,17,18,19,20,21,22,24,26,27,28,29,30,31,32,33,34,35,36,38,39,40,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,65,66,67,70,71,72,73,74,75,76,78,79,80,82,83,84,85,88,89,90,91,92,93,94,95,96,98,99,100,102,103,104,105,106,107,108,109,110,111,113,114,115,117,119,120,121,122,124,125,126,127],motif:[118,119,120,121],motifinfo:121,multipl:8,name:[2,3,4,5],namespac:25,nonlinearintegratedgradientevalu:57,occlus:33,onli:8,oper:[93,100],optim:12,output:129,packag:[14,15,23,28,37,41,64,68,69,77,81,86,87,97,101,112,116,118,123],parser:[101,102,103,104,105,106],path:34,pattern:35,perturb:36,pr:8,prcompar:19,predict:8,predictevalu:61,prevalu:62,previous:8,process:12,protein:75,proteinhelp:76,python:13,pytorch_fix:38,real_tim:[37,38,39,40],refer:6,requir:11,resnet_encod:39,result:8,roc:8,roccompar:20,rocevalu:63,root:8,rule:94,run:8,saliency_ev:40,saliencyevalu:58,schema:107,scheme:10,seqgra:[2,3,4,5,6,8,11,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127],seqgraa:109,sequenc:7,sequenceel:95,si:[8,64,65],simul:[112,113,114,115,116,117,118,119,120,121,122,128],sisevalu:66,smoothgradevalu:59,spacingconstraint:96,structur:129,submodul:[14,15,23,25,28,37,41,64,68,69,77,81,87,97,101,112,116,118,123],subpackag:[14,23,25,68,86,112],subsampl:8,suit:8,summar:8,summari:5,synthes:8,synthet:8,system:11,tabl:8,tablecompar:21,tensorflow:[77,78,79,80],torch:[81,82,83,84],torchdataset:82,torchhelp:83,torchlearn:84,train:[8,12],us:8,usag:[8,11],util:1,variou:8,wa:8,what:11,writer:[123,124,125,126,127],xmldatadefinitionpars:104,xmldatadefinitionwrit:126,xmlhelper:105,xmlmodeldefinitionpars:106,xmlmodeldefinitionwrit:127}})
\ No newline at end of file
diff --git a/docs/seqgra.comparator.curvetablecomparator.html b/docs/seqgra.comparator.curvetablecomparator.html
index 0a8af3b..7ab9620 100644
--- a/docs/seqgra.comparator.curvetablecomparator.html
+++ b/docs/seqgra.comparator.curvetablecomparator.html
@@ -214,7 +214,13 @@
             
   

 
seqgra.comparator.curvetablecomparator module

-
MIT - CSAIL - Gifford Lab - seqgra

+
Curve Table Comparator for PR and ROC curve information

+

+
Classes:

+

+

 

 

 class CurveTableComparator(analysis_id: str, output_dir: str, model_labels: Optional[List[str]] = None, silent: bool = False)[source]

diff --git a/docs/seqgra.comparator.fietablecomparator.html b/docs/seqgra.comparator.fietablecomparator.html
index 4a086ae..1edf6df 100644
--- a/docs/seqgra.comparator.fietablecomparator.html
+++ b/docs/seqgra.comparator.fietablecomparator.html
@@ -214,7 +214,13 @@
             
   

 
seqgra.comparator.fietablecomparator module

-
MIT - CSAIL - Gifford Lab - seqgra

+
Feature Importance Evaluator Table Comparator for feature importance measures

+

+
Classes:

+

+

 

 

 class FIETableComparator(analysis_id: str, output_dir: str, model_labels: Optional[List[str]] = None, silent: bool = False)[source]

diff --git a/docs/seqgra.comparator.prcomparator.html b/docs/seqgra.comparator.prcomparator.html
index 8df1619..c04f000 100644
--- a/docs/seqgra.comparator.prcomparator.html
+++ b/docs/seqgra.comparator.prcomparator.html
@@ -214,9 +214,13 @@
             
   

 
seqgra.comparator.prcomparator module

-
MIT - CSAIL - Gifford Lab - seqgra

-
ROC comparator: creates ROC curves of different models

-
@author: Konstantin Krismer

+
Creates PR curves of different models

+

+
Classes:
    
+
  • PRComparator: creates PR curves from various grammars and architectures
    • 
+

+

+

 

 

 class PRComparator(analysis_id: str, output_dir: str, model_labels: Optional[List[str]] = None, silent: bool = False)[source]

diff --git a/docs/seqgra.comparator.roccomparator.html b/docs/seqgra.comparator.roccomparator.html
index b15c795..de9c069 100644
--- a/docs/seqgra.comparator.roccomparator.html
+++ b/docs/seqgra.comparator.roccomparator.html
@@ -214,9 +214,13 @@
             
   

 
seqgra.comparator.roccomparator module

-
MIT - CSAIL - Gifford Lab - seqgra

-
ROC comparator: creates ROC curves of different models

-
@author: Konstantin Krismer

+
Creates ROC curves of different models

+

+
Classes:
    
+
  • ROCComparator: creates ROC curves from various grammars and architectures
    • 
+

+

+

 

 

 class ROCComparator(analysis_id: str, output_dir: str, model_labels: Optional[List[str]] = None, silent: bool = False)[source]

diff --git a/docs/seqgra.comparator.tablecomparator.html b/docs/seqgra.comparator.tablecomparator.html
index 8f5bee5..9e2f8b3 100644
--- a/docs/seqgra.comparator.tablecomparator.html
+++ b/docs/seqgra.comparator.tablecomparator.html
@@ -214,7 +214,13 @@
             
   

 
seqgra.comparator.tablecomparator module

-
MIT - CSAIL - Gifford Lab - seqgra

+
Table Comparator for grammar and model information

+

+
Classes:

+

+

 

 

 class TableComparator(analysis_id: str, output_dir: str, model_labels: Optional[List[str]] = None, silent: bool = False)[source]

diff --git a/seqgra/comparator/curvetablecomparator.py b/seqgra/comparator/curvetablecomparator.py
index b33f1cd..8733aad 100644
--- a/seqgra/comparator/curvetablecomparator.py
+++ b/seqgra/comparator/curvetablecomparator.py
@@ -1,5 +1,8 @@
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Curve Table Comparator for PR and ROC curve information
+
+Classes:
+    - :class:`~seqgra.comparator.curvetablecomparator.CurveTableComparator`: collects PR and ROC curve information in text file
 """
 from typing import List, Optional
 import os
diff --git a/seqgra/comparator/fietablecomparator.py b/seqgra/comparator/fietablecomparator.py
index 82c4c71..144ece9 100644
--- a/seqgra/comparator/fietablecomparator.py
+++ b/seqgra/comparator/fietablecomparator.py
@@ -1,5 +1,8 @@
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Feature Importance Evaluator Table Comparator for feature importance measures
+
+Classes:
+    - :class:`~seqgra.comparator.fietablecomparator.FIETableComparator`: collects feature importance evaluator information in text file
 """
 from typing import List, Optional
 import os
diff --git a/seqgra/comparator/prcomparator.py b/seqgra/comparator/prcomparator.py
index 5af66ed..278aee1 100644
--- a/seqgra/comparator/prcomparator.py
+++ b/seqgra/comparator/prcomparator.py
@@ -1,9 +1,8 @@
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Creates PR curves of different models
 
-ROC comparator: creates ROC curves of different models
-
-@author: Konstantin Krismer
+Classes:
+    - :class:`~seqgra.comparator.prcomparator.PRComparator`: creates PR curves from various grammars and architectures
 """
 from typing import List, Optional
 import os
diff --git a/seqgra/comparator/roccomparator.py b/seqgra/comparator/roccomparator.py
index 462a4ae..5692c4d 100644
--- a/seqgra/comparator/roccomparator.py
+++ b/seqgra/comparator/roccomparator.py
@@ -1,9 +1,8 @@
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Creates ROC curves of different models
 
-ROC comparator: creates ROC curves of different models
-
-@author: Konstantin Krismer
+Classes:
+    - :class:`~seqgra.comparator.roccomparator.ROCComparator`: creates ROC curves from various grammars and architectures
 """
 from typing import List, Optional
 import os
diff --git a/seqgra/comparator/tablecomparator.py b/seqgra/comparator/tablecomparator.py
index 42bbd11..3c3d3b6 100644
--- a/seqgra/comparator/tablecomparator.py
+++ b/seqgra/comparator/tablecomparator.py
@@ -1,5 +1,8 @@
 """
-MIT - CSAIL - Gifford Lab - seqgra
+Table Comparator for grammar and model information
+
+Classes:
+    - :class:`~seqgra.comparator.tablecomparator.TableComparator`: collects grammar and model information in text file
 """
 from typing import List, Optional, Tuple
 import os