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[variant-wb-somatic] Spike - Determine how the somatic files can fit in the current model of the vwb #3331

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botekchristophe opened this issue Jun 11, 2021 · 0 comments
Open

[variant-wb-somatic] Spike - Determine how the somatic files can fit in the current model of the vwb #3331

botekchristophe opened this issue Jun 11, 2021 · 0 comments
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@jecos @botekchristophe
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ETL Variant [Scope] Related to the Variant

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botekchristophe commented Jun 11, 2021 •
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exemple of somatic file:
PNOC : s3://kf-study-us-east-1-prd-sd-8y99qzjj/harmonized-data/simple-variants/*consensus_somatic.public.vcf.gz
CBTN: s3://kf-study-us-east-1-prd-sd-bhjxbdqk/harmonized-data/simple-variants/*consensus_somatic.public.vcf.gz

  • 4 callers
  • some studies have somatic files only (eg sd-8y99qzjj)
  • for acls: some data is flagged as 'maybe germline' and thus should not be public
@botekchristophe botekchristophe added ETL Variant [Scope] Related to the Variant labels Jun 11, 2021
@botekchristophe botekchristophe changed the title Spike - Determine how the somatic files can fit in the current model of the vwb [variant-wb-somatic] Spike - Determine how the somatic files can fit in the current model of the vwb Jun 18, 2021
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@jecos @botekchristophe