No csv output

[guildelhaye]

Hi Alex,
I got a problem with function 2 when using a large amount of sequences in the "all.merged_ITS_seqs" file, it does produce the cluster membersip and syntax classification but not the cluster_with_taxonomy.csv.
The error message is :

Traceback (most recent call last):
File "/home/guillaume/its_glue/./scripts/modules/cluster_classify_organise_output.py", line 33, in
ids_list.append(mem_id[0])
IndexError: list index out of range

Could you have a look at this please?
Thanks

[blex-max]

Hi G,

Could you please upload the cluster membership and syntax classification files?

[guildelhaye]

otu.zip
Here it is,
Thanks

[blex-max]

Issue fixed. For the sake of speed, I've produced the file for you. I'll push the fix to the repo later today and then you'll need to clone the latest version.

clusters_with_taxonomy.csv

[blex-max]

Please let me know if that fixes your issue