diff --git a/pipe_one.trace_its.sh b/pipe_one.trace_its.sh index f13cb2a..9f3104c 100755 --- a/pipe_one.trace_its.sh +++ b/pipe_one.trace_its.sh @@ -97,7 +97,7 @@ for file in "$trace_dir"/*"$r_tag".* ; do # grab matching file ffile=("$trace_dir"/"$code"*"$f_tag".*) - # assemble - -t 2 best trimming so far in terms of result. -qurs tbc -q 100 -u 500 -r 100 -s 500. -qurs equal is appealing... getting the right -p might be valuable + # assemble if ./tracy/tracy consensus \ -o "$out_dir"/assembly/"$code"_cons \ @@ -126,7 +126,7 @@ if [ "$trac_count" -eq 0 ] ; then exit 1 fi -echo ""${trac_count}"/"${ftot}" assembled, "${fail_count}" failures - check logs for failure details" +echo ""${trac_count}"/"${ftot}" assembled, "${fail_count}" failures - check logs for any failure details" # STDOUT and STDERR logged # no trimming performed with -qurs