Microscopy data most of the times relates to images (i.e., 2D-data). However, sometimes spectral information represents just one-dimensional data or it extends an image by a spectrum at every pixel to a three-dimensional dataset. In a similar way the focus of this package lays on 2D-datasets, but also extends from time to time.
Main features are:
stitching images on a grid
stack aligning
line detection
After changing into the directory containing setup.py , install via
pip install -r /docs/requirements.txt
pip install .
Documentation: https://microscopy-data-analysis.readthedocs.io
To make sure everything works fine, tests can be executed by typing
pytest