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psnovichkov

to support ExpressionMatrix viewer

Jun 25, 2015

9fd4b5d · Jun 25, 2015

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Name		Name	Last commit message	Last commit date
parent directory ..
add_kbase_annotation_generic		add_kbase_annotation_generic	copied basic things from the production specs repo	Nov 14, 2014
align_protein_sequences_generic		align_protein_sequences_generic	copied basic things from the production specs repo	Nov 14, 2014
annotate_contigset		annotate_contigset	Tutorial link test	Feb 20, 2015
annotate_domains_in_genome_generic		annotate_domains_in_genome_generic	fix yaml parsing error	Feb 6, 2015
annotate_genome_generic		annotate_genome_generic	copied basic things from the production specs repo	Nov 14, 2014
annotate_metagenome		annotate_metagenome	fix viewer input	May 21, 2015
annotate_plant_transcripts		annotate_plant_transcripts	Adding constant parameter to plant annotation method	Feb 9, 2015
assemble_contigset_from_reads		assemble_contigset_from_reads	added 'next' for a number of them in the display.yaml	Jan 29, 2015
build_a_metabolic_model		build_a_metabolic_model	Tutorial link test	Feb 20, 2015
build_gene_tree_generic		build_gene_tree_generic	copied basic things from the production specs repo	Nov 14, 2014
build_genome_set_from_tree_generic		build_genome_set_from_tree_generic	synced a large set of minor things with production narrative specs	Jan 23, 2015
calculate_annotation_likelihoods		calculate_annotation_likelihoods	fix typos in prob anno methods	May 6, 2015
calculate_reaction_likelihoods		calculate_reaction_likelihoods	fix typos in prob anno methods	May 6, 2015
compare_two_metabolic_models_generic		compare_two_metabolic_models_generic	synced a large set of minor things with production narrative specs	Jan 23, 2015
compare_two_proteomes_generic		compare_two_proteomes_generic	added 'next' for a number of them in the display.yaml	Jan 29, 2015
compute_metagenome_annotation_set		compute_metagenome_annotation_set	fix param name	Jan 30, 2015
compute_pangenome		compute_pangenome	added 'next' for a number of them in the display.yaml	Jan 29, 2015
convert_annotation_file_to_contig_set		convert_annotation_file_to_contig_set	update screenshots	Feb 2, 2015
data_visualization		data_visualization	synced a large set of minor things with production narrative specs	Jan 23, 2015
gapfill_a_metabolic_model		gapfill_a_metabolic_model	Removing solution integration option from gap filling, and removing p…	Feb 9, 2015
genome_comparison_from_pangenome		genome_comparison_from_pangenome	synced a large set of minor things with production narrative specs	Jan 23, 2015
heatmap_from_abundance_profile		heatmap_from_abundance_profile	synced a large set of minor things with production narrative specs	Jan 23, 2015
import_contigset		import_contigset	synced a large set of minor things with production narrative specs	Jan 23, 2015
import_contigset_fasta_file		import_contigset_fasta_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_contigset_fasta_ftp		import_contigset_fasta_ftp	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_fbamodel_csv_file		import_fbamodel_csv_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_fbamodel_excel_file		import_fbamodel_excel_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_fbamodel_sbml_file		import_fbamodel_sbml_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_genome_data_generic		import_genome_data_generic	synced a large set of minor things with production narrative specs	Jan 23, 2015
import_genome_gbk_file		import_genome_gbk_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_genome_gbk_ftp		import_genome_gbk_ftp	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_knockout_growth_phenotype_file		import_knockout_growth_phenotype_file	fonts	Feb 7, 2015
import_media_csv_file		import_media_csv_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_media_excel_file		import_media_excel_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_ncbi_genome_generic		import_ncbi_genome_generic	copied basic things from the production specs repo	Nov 14, 2014
import_phenotypeset_csv_file		import_phenotypeset_csv_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_reads_fasta_file		import_reads_fasta_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_reads_pe_fastq_file		import_reads_pe_fastq_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_reads_se_fastq_file		import_reads_se_fastq_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
import_transcript_file		import_transcript_file	Test for changes in method specs (KBASE-1672).	Mar 11, 2015
insert_genomeset_into_species_tree_generic		insert_genomeset_into_species_tree_generic	Limitation for number of close public genomes.	Feb 12, 2015
insert_set_of_genomes_into_species_tree_generic		insert_set_of_genomes_into_species_tree_generic	a different test of bad next method	Feb 22, 2015
merge_to_community_model		merge_to_community_model	added 'next' for a number of them in the display.yaml	Jan 29, 2015
metagenome_annotation_to_models		metagenome_annotation_to_models	Fixing bug in yaml file for method	Feb 4, 2015
metagenome_list		metagenome_list	synced a large set of minor things with production narrative specs	Jan 23, 2015
method_example		method_example	test float limits	Feb 12, 2015
new_example_method		new_example_method	display.yaml	Jan 22, 2015
normalize_abundance_profile		normalize_abundance_profile	synced a large set of minor things with production narrative specs	Jan 23, 2015
pcoa_from_abundance_profile		pcoa_from_abundance_profile	synced a large set of minor things with production narrative specs	Jan 23, 2015
reannotate_microbial_genome		reannotate_microbial_genome	Update display.yaml	Feb 20, 2015
retrieve_functional_abundance_profile		retrieve_functional_abundance_profile	added 'next' for a number of them in the display.yaml	Jan 29, 2015
retrieve_taxonomic_abundance_profile		retrieve_taxonomic_abundance_profile	synced a large set of minor things with production narrative specs	Jan 23, 2015
run_flux_balance_analysis		run_flux_balance_analysis	Removing solution integration option from gap filling, and removing p…	Feb 9, 2015
simulate_growth_on_a_phenotype_set		simulate_growth_on_a_phenotype_set	synced a large set of minor things with production narrative specs	Jan 23, 2015
test_interface_to_rbtn_seq		test_interface_to_rbtn_seq	changed port to 8080	Feb 19, 2015
translate_model_to_new_genome		translate_model_to_new_genome	added 'next' for a number of them in the display.yaml	Jan 29, 2015
view_abundance_profile_boxplots		view_abundance_profile_boxplots	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_abundance_profile_data		view_abundance_profile_data	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_abundance_profile_heatmap		view_abundance_profile_heatmap	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_abundance_profile_metadata		view_abundance_profile_metadata	copied basic things from the production specs repo	Nov 14, 2014
view_abundance_profile_pcoa		view_abundance_profile_pcoa	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_abundance_profile_rank_plot		view_abundance_profile_rank_plot	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_abundance_profile_values		view_abundance_profile_values	fix so viewer method can work with drop-and-drag viewing	Feb 9, 2015
view_assemblyreport		view_assemblyreport	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_barseq_results		view_barseq_results	view_barseq_results added	Mar 18, 2015
view_contigset		view_contigset	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_domain_annotation		view_domain_annotation	Changed the outputwidet name	Jan 24, 2015
view_expression_matrix		view_expression_matrix	to support ExpressionMatrix viewer	Jun 25, 2015
view_fba_model_set		view_fba_model_set	testing KBaseFBA.FBAModelSet	Feb 17, 2015
view_fba_result_details		view_fba_result_details	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_files		view_files	copied basic things from the production specs repo	Nov 14, 2014
view_genome		view_genome	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_genome_2		view_genome_2	copied basic things from the production specs repo	Nov 14, 2014
view_genome_comparison		view_genome_comparison	testing KBaseGenomes.GenomeComparison	Feb 17, 2015
view_genomeset		view_genomeset	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_kbase_commands		view_kbase_commands	copied basic things from the production specs repo	Nov 14, 2014
view_kbase_subsystem_data		view_kbase_subsystem_data	copied basic things from the production specs repo	Nov 14, 2014
view_media		view_media	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_metabolic_model_details		view_metabolic_model_details	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_metagenome		view_metagenome	more viewers to test	Jan 30, 2015
view_mg_annotations		view_mg_annotations	more viewers to test	Jan 30, 2015
view_mg_collection		view_mg_collection	Update spec.json	Feb 13, 2015
view_multiple_alignment		view_multiple_alignment	copied basic things from the production specs repo	Nov 14, 2014
view_pangenome		view_pangenome	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_phenotype_set		view_phenotype_set	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_phenotype_simulation_results		view_phenotype_simulation_results	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_png_file		view_png_file	copied basic things from the production specs repo	Nov 14, 2014
view_proteome_comparison		view_proteome_comparison	synced a large set of minor things with production narrative specs	Jan 23, 2015
view_tree		view_tree	synced a large set of minor things with production narrative specs	Jan 23, 2015
index.json		index.json	synced with production narrative_method_specs; nothing was removed, b…	Jan 20, 2015
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