Files

stored_queries

Aug 2, 2022

6ef66dd · Aug 2, 2022

Name	Name	Last commit message	Last commit date
parent directory ..
GO	GO	rename GO_get_terms_from_ws_objects to GO_get_terms_from_ws_object	Jan 14, 2021
djornl	djornl	Updating edge files to account for changed names	Dec 16, 2020
ncbi_tax	ncbi_tax	Fix limit on lineage query	Nov 5, 2019
ontology	ontology	add ontology_get_term_by_name query	Apr 20, 2021
taxonomy	taxonomy	col -> coll for collection, add link to species_and_under docs	Aug 2, 2022
test	test	Add another test query; clean up AQL syntax; move into test subdir (#114	Oct 15, 2019
ws	ws	Additional collections for WITH clause to fix query	Jan 28, 2021
wsprov	wsprov	Rename "wsfull" to "ws", add "is_public" flag, update queries and tes…	Aug 23, 2019
README.md	README.md	Reorganize queries (#67 )	Jul 23, 2019
list_genes_for_similar_reactions.yaml	list_genes_for_similar_reactions.yaml	Fix stored query; move WITH clause into prefix	Dec 12, 2019
search_compounds.yaml	search_compounds.yaml	Reorganize queries (#67 )	Jul 23, 2019
search_reactions.yaml	search_reactions.yaml	Fix type of property in search_reactions query	Jul 29, 2019

Stored queries are templated AQL queries that fetch data from the database.

Variables in stored queries are prefixed with @.

The params field in each stored query should be a JSON schema of the query's parameters.

Each stored query file should have a set of comments at the top describing the purpose of the query.

See the API docs to see how to run these queries using the API.