diff --git a/configs/vision/pathology/offline/segmentation/consep.yaml b/configs/vision/pathology/offline/segmentation/consep.yaml index b9a7fced..728310da 100644 --- a/configs/vision/pathology/offline/segmentation/consep.yaml +++ b/configs/vision/pathology/offline/segmentation/consep.yaml @@ -108,10 +108,7 @@ data: init_args: &PREDICT_DATASET_ARGS root: ${oc.env:DATA_ROOT, ./data/consep} split: train - sampler: - class_path: eva.vision.data.wsi.patching.samplers.ForegroundGridSampler - init_args: - max_samples: 25 + sampler: eva.vision.data.wsi.patching.samplers.GridSampler transforms: class_path: eva.vision.data.transforms.common.ResizeAndCrop init_args: diff --git a/configs/vision/pathology/online/segmentation/consep.yaml b/configs/vision/pathology/online/segmentation/consep.yaml index 547a3bc5..4b90c3bb 100644 --- a/configs/vision/pathology/online/segmentation/consep.yaml +++ b/configs/vision/pathology/online/segmentation/consep.yaml @@ -90,10 +90,7 @@ data: init_args: &DATASET_ARGS root: ${oc.env:DATA_ROOT, ./data/consep} split: train - sampler: - class_path: eva.vision.data.wsi.patching.samplers.ForegroundGridSampler - init_args: - max_samples: 25 + sampler: eva.vision.data.wsi.patching.samplers.GridSampler transforms: class_path: eva.vision.data.transforms.common.ResizeAndCrop init_args: diff --git a/src/eva/vision/data/datasets/segmentation/consep.py b/src/eva/vision/data/datasets/segmentation/consep.py index c05adbff..46370f74 100644 --- a/src/eva/vision/data/datasets/segmentation/consep.py +++ b/src/eva/vision/data/datasets/segmentation/consep.py @@ -37,8 +37,8 @@ def __init__( root: str, sampler: samplers.Sampler | None = None, split: Literal["train", "val"] | None = None, - width: int = 224, - height: int = 224, + width: int = 250, + height: int = 250, target_mpp: float = 0.25, transforms: Callable | None = None, ) -> None: