From 95eed5fc9c2f52d4dd3434eb5f20f0676e7eb989 Mon Sep 17 00:00:00 2001 From: Ben Cocanougher Date: Mon, 24 Jun 2019 09:46:07 -0400 Subject: [PATCH] Update README.md --- README.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/README.md b/README.md index 24ece2b..66f73e3 100644 --- a/README.md +++ b/README.md @@ -1 +1,14 @@ # polyseq + +polyseq is an open source python package for single cell RNA sequencing analysis and visualization. polyseq starts with a gene by cell matrix, which is then filtered for high quality cells, normalized, regressed, reduced, and clustered.visualization can then be performed with tSNE or umap for the full dataset. polyseq includes inbuilt functionality for violin plots and heatmaps. the data remains in a form that is easy to integrate with the vast community of python packages for further visualization and analysis + +### installation +pip install -r requirements.txt --user
+pip install -e . + +### demo jupyter notebook +check out a demo inside the pacakge here: +examples/demo.ipynb + +### contributors +the code was written by jason wittenbach for the purpose of analyzing data collected by ben cocanougher at janelia research campus. it is useful for any single cell genomics data.